Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041646 [exp] 43 / 5e-05 AT3G45140 939 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040269 pacid=23174073 polypeptide=Lus10040269 locus=Lus10040269.g ID=Lus10040269.BGIv1.0 annot-version=v1.0 ATGATGGGGCCTTTCGAGCCTGGAAGTCCGTCCAGATGGCACCTGACCTCTCGTTCATGTGCATTTTTTAATACAGGATACACGTATTATAAAATCTCCA TGCTCTGCGACGGTTATTCTTTGGTAACTGCCTCCGTCTGCCTTGCCGCCGTGGTTCCTTCGAGCAATGGTCCCTTCTCCTCCTCTACCACCTGCTCTGC CACGAAGGTTGGCCGTTCCCGTTTGGGCTTGCCGGAGATGGAGGGACGAACCGAGGGCGAGCAGTCCATGTTGACGGTGCCAGTTATGATGGGGTCCTTG ATGAACTTCTCTGCGGTGAGGAATGCCAACTTGCCAAGACGCCATTTGTTGGCATTCCAACGAGGCTCGGTGGTGCGGTGGATACACGAGATGATGACAT CTTTCGAATACCCGTCCCAAGGGGAGTTGGGACTCTTTACATCGGGTGTTGTTATTATTTGGGGAGTAATTTTCGGGACTTTGTTTTTCTCTACAACAAG TCTTCATGATTTATCTTCGGACAGTTTTTCGATTAGGTAG
AA sequence Show only first row Show all	>Lus10040269 pacid=23174073 polypeptide=Lus10040269 locus=Lus10040269.g ID=Lus10040269.BGIv1.0 annot-version=v1.0 MMGPFEPGSPSRWHLTSRSCAFFNTGYTYYKISMLCDGYSLVTASVCLAAVVPSSNGPFSSSTTCSATKVGRSRLGLPEMEGRTEGEQSMLTVPVMMGSL MNFSAVRNANLPRRHLLAFQRGSVVRWIHEMMTSFEYPSQGELGLFTSGVVIIWGVIFGTLFFSTTSLHDLSSDSFSIR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10040269 [exp]	0	1
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10025231 [exp]	1.0	0.9470
AT5G52250		EFO1, RUP1	REPRESSOR OF UV-B PHOTOMORPHOG...		Lus10005742 [exp]	1.4	0.9084
AT5G44785		OSB3	organellar single-stranded DNA...		Lus10002722 [exp]	4.2	0.8456
ATCG00490		ATCG00490.1, RB...	ribulose-bisphosphate carboxyl...		Lus10032825 [exp]	4.9	0.9072
ATCG00120		ATCG00120.1, AT...	ATP synthase subunit alpha (.1...		Lus10004894 [exp]	7.4	0.8693
AT5G19580			glyoxal oxidase-related protei...		Lus10043230 [exp]	8.7	0.8734
AT3G11900		ANT1	aromatic and neutral transport...		Lus10017224 [exp]	9.4	0.8164
ATCG00480		ATCG00480.1, AT...	ATP synthase subunit beta (.1)		Lus10032827 [exp]	10.9	0.8394
AT1G14280		PKS2	phytochrome kinase substrate 2...		Lus10037181 [exp]	14.2	0.7887
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029390 [exp]	15.5	0.8357

Compare expression of checked genes

Lus10040269 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.