Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29380 345 / 4e-117 HAI3 highly ABA-induced PP2C gene 3 (.1) AT1G07430 340 / 4e-114 HAI2 highly ABA-induced PP2C gene 2 (.1) AT3G11410 337 / 3e-113 ATPP2CA, AHG3 ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA (.1) AT5G59220 316 / 8e-105 SAG113, HAI1 senescence associated gene 113, highly ABA-induced PP2C gene 1 (.1) AT4G26080 231 / 1e-71 AtABI1, ABI1 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) AT5G57050 218 / 2e-67 AtABI2, ABI2 ABA INSENSITIVE 2, Protein phosphatase 2C family protein (.1.2) AT5G51760 216 / 4e-66 AHG1 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) AT1G72770 216 / 7e-65 HAB1 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) AT1G17550 212 / 2e-63 HAB2 homology to ABI2 (.1) AT1G43900 152 / 4e-42 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004703 [exp] 682 / 0 AT2G29380 392 / 3e-135 highly ABA-induced PP2C gene 3 (.1) Lus10016493 [exp] 356 / 3e-120 AT1G07430 421 / 2e-145 highly ABA-induced PP2C gene 2 (.1) Lus10040738 [exp] 352 / 2e-118 AT1G07430 429 / 7e-148 highly ABA-induced PP2C gene 2 (.1) Lus10019017 [exp] 218 / 4e-67 AT2G29380 280 / 3e-92 highly ABA-induced PP2C gene 3 (.1) Lus10026447 [exp] 207 / 4e-61 AT1G72770 465 / 1e-159 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10025000 [exp] 206 / 5e-61 AT1G72770 467 / 1e-160 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10003399 [exp] 197 / 3e-60 AT2G29380 252 / 2e-82 highly ABA-induced PP2C gene 3 (.1) Lus10012962 [exp] 200 / 6e-60 AT4G26080 315 / 2e-104 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) Lus10034965 [exp] 176 / 3e-51 AT1G72770 249 / 3e-79 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G059200 [exp] 430 / 4e-150 AT1G07430 362 / 1e-122 highly ABA-induced PP2C gene 2 (.1) Potri.010G199600 [exp] 425 / 6e-148 AT3G11410 386 / 9e-133 ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA (.1) Potri.001G245200 [exp] 358 / 6e-121 AT2G29380 410 / 5e-142 highly ABA-induced PP2C gene 3 (.1) Potri.009G037300 [exp] 355 / 6e-120 AT1G07430 401 / 2e-137 highly ABA-induced PP2C gene 2 (.1) Potri.015G018800 [exp] 236 / 1e-74 AT1G07430 236 / 2e-74 highly ABA-induced PP2C gene 2 (.1) Potri.015G133900 [exp] 236 / 3e-74 AT5G51760 338 / 1e-113 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) Potri.012G131800 [exp] 230 / 1e-71 AT5G51760 332 / 3e-111 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) Potri.001G092100 [exp] 223 / 5e-69 AT1G07430 219 / 3e-67 highly ABA-induced PP2C gene 2 (.1) Potri.012G002700 [exp] 217 / 7e-67 AT2G29380 225 / 8e-71 highly ABA-induced PP2C gene 3 (.1) Potri.006G164632 [exp] 208 / 2e-63 AT4G26080 300 / 1e-98 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10040270 pacid=23173891 polypeptide=Lus10040270 locus=Lus10040270.g ID=Lus10040270.BGIv1.0 annot-version=v1.0 ATGGAGTGGCCTCGGGCGGGGGGCCGGCCACCCTCCAAAGTTTCTCGCCGGAGGCGATTGGAGCACCGTCAGTTCTCGATCTCTCTTGATGTGGCCGCGC CTTCCTTTTCTTCCGATGGAATCAGCAGGAAACAGCGTAAGCTCGTTCACTCTGCTGCTGCCCCGAGTAGCTCCCGGGATTGCCTGAATGCAGTCGAGAA TTCCAGTGATTTGAAAAGAGACGACGAATCCGCTGCTCCGAAATCTGTTATAAATGAATATTCCGATCTGAAATTGGAGCACGATAGTGAAGGTCCATCC GCGAAATTCGGCTTTACCTCCGTTTGTGGGAGGAGGAGGGATATGGAAGATGCCGTTTCCGTACAGACATCATTCGGCCCGCGGGAAGGCACATCTTTTT TCGGCGTGTTCGACGGTCACGGTTGCTCTCATGTGGCCATGAAGTGTAAGGATCGGTTACATGAGATATTGGAAGAAGAAATCAGGAGTTACGAGAAGAA GGATCCAATCGAATGGAAGGAAACCATGGGACGAAGCTTCGCGACAATGGACGGAGAGGTTGGAGTTTGGAGCGAGGAAGCAGCTAAGGCTTCCACTTGC CGCTGCGAGCTCCAAACGCCGCAGTGCGACGCTGTTGGATCCACGGCAGTTGCAGCTGTGGTGACTCCGGATAAGATCGTCGTTTCCAACTGTGGTGATT CCCGTGCCGTCCTCTGCCGTAACGGCGTGGCCATCCCACTCTCGTCTGATCATAAGCCTGACCGGCCCGACGAGTTGCTCCGGATCGAAGCTGCCGGCGG CCGTGTGATATACTGGGACGGGGCGAGAGTCCTCGGAGTTCTAGCTATGTCCAGAGCAATCGGGGACAACTACTTGAAACCGTACGTGATTTCGGAGCCG GAGGTAACAATAACGGAGAGGACAGGCGACGAGGAGTGTTTAATCCTCGCCAGCGACGGCCTGTGGGACGTTGTCTCGAACGAAACCGCATGCGGAGTGG TCAAGATGTGCCTCGCCGGTCAAAAGTCCTCGTCGCCTATGGGTTCCGACGGGGTGGACGCCGCCGTGGGGAGTGGCTCCGACAAGGCCTGCTTCGACGC TTCTATGCTACTAACGAAGCTGGCGCTCGCCAGACACAGTAGCGACAACGTCAGCGTGGTCGTCGTCGATTTAAGACGGAAATCATCATCAACAACAGAT CCGACGACGAAATCTTAA
AA sequence Show only first row Show all	>Lus10040270 pacid=23173891 polypeptide=Lus10040270 locus=Lus10040270.g ID=Lus10040270.BGIv1.0 annot-version=v1.0 MEWPRAGGRPPSKVSRRRRLEHRQFSISLDVAAPSFSSDGISRKQRKLVHSAAAPSSSRDCLNAVENSSDLKRDDESAAPKSVINEYSDLKLEHDSEGPS AKFGFTSVCGRRRDMEDAVSVQTSFGPREGTSFFGVFDGHGCSHVAMKCKDRLHEILEEEIRSYEKKDPIEWKETMGRSFATMDGEVGVWSEEAAKASTC RCELQTPQCDAVGSTAVAAVVTPDKIVVSNCGDSRAVLCRNGVAIPLSSDHKPDRPDELLRIEAAGGRVIYWDGARVLGVLAMSRAIGDNYLKPYVISEP EVTITERTGDEECLILASDGLWDVVSNETACGVVKMCLAGQKSSSPMGSDGVDAAVGSGSDKACFDASMLLTKLALARHSSDNVSVVVVDLRRKSSSTTD PTTKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10040270 [exp]	0	1
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10016521 [exp]	3.9	0.7999
AT5G17260	NAC	ANAC086	NAC domain containing protein ...		Lus10010096 [exp]	5.7	0.7399
AT3G59060	bHLH	PIF5, PIL6	PHYTOCHROME-INTERACTING FACTOR...		Lus10029805 [exp]	7.5	0.7809
AT2G36970			UDP-Glycosyltransferase superf...		Lus10021438 [exp]	11.8	0.7591
AT5G01970			unknown protein		Lus10035153 [exp]	12.2	0.7085
AT1G12450			SNARE associated Golgi protein...		Lus10006674 [exp]	13.7	0.7696
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10030786 [exp]	14.1	0.7587
AT1G20560		AAE1	acyl activating enzyme 1 (.1.2...		Lus10016011 [exp]	16.1	0.7671
AT5G06440			unknown protein		Lus10021251 [exp]	24.5	0.7325
AT5G17260	NAC	ANAC086	NAC domain containing protein ...		Lus10007216 [exp]	27.7	0.6655

Compare expression of checked genes

Lus10040270 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.