Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74260 367 / 7e-117 PUR4 purine biosynthesis 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004706 [exp] 519 / 1e-174 AT1G74260 2253 / 0.0 purine biosynthesis 4 (.1) Lus10030542 [exp] 438 / 2e-143 AT1G74260 2303 / 0.0 purine biosynthesis 4 (.1) Lus10012890 [exp] 437 / 3e-143 AT1G74260 2323 / 0.0 purine biosynthesis 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G058600 [exp] 419 / 5e-139 AT1G74260 1642 / 0.0 purine biosynthesis 4 (.1) Potri.010G200200 [exp] 417 / 2e-135 AT1G74260 2285 / 0.0 purine biosynthesis 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040272 pacid=23174083 polypeptide=Lus10040272 locus=Lus10040272.g ID=Lus10040272.BGIv1.0 annot-version=v1.0 ATGGATGCTCACCTTGTTGTTCAAAACTTCAAGATAATTGATAAGGAACTTGTTGAGTTCAGAGAAATCATGAGAAGGTGTCAGGAAGGAACGCAAGGGC AAACTCTGTTTCTAAACAGGAATTCGCCTCTCAACAGGCGAAACCAATTGATATTGGGAACACTCCGCGCTGGAAGAAGAGCTGTCTCACTGAGATGTTC TTCCACGTCCCCAAAGGTAAGTGCTTTGGTTTCTGGAGGTGTGGGGAACTCTGTTGATGAACAGCCCAGGTTTTCTGACAAGCCAACGGAAGAAGTTATC CATTTCTATAGGGTACCATTTATTCAAGAGAGTGCAACTCTTGAACTGCTCAAGTCAGCTCAAATCAAAGTGTCGAATGACATTGTCGGGTTACAGACTG AACAGTGTTTCAATGTTGAGCTTACTTCCCAGCTTTCGAGCGACAAGCTTGCTGTACTTGGGTGGCTTCTTCAGGAAACGTACGAGCCTGAGAATTTGGG CACTGAGAGCTTCCTTGAGAAGAAGAGGAGAGAAGGGTTGAGTACTGTTATAGTTGAGGTTGGTCCCAGGTTGTCTTTCACCACTGCTTGGTCGGCGAAT GCTGTTTCGATATGTAGTGCTTGTGGGCTTAATGAGGTGACTAGATTGGAAAGGTCGAAGAGATATTTGTTATATAGTAAGGGTCCTTTACTGGATTATC AGATTAACGAGTTTGCTTCCATGGTTCATGATCGAATGACTGAGTGTGTCTACATTCAGAAGTTGACGTCTTTTACGACCAGTGTGGTTCCTGAGGAAGT TCGGTTTGTTCCTGTTATGGAGAGGGGAAGGGAGGCGTTGGAAGAGATTAATCAGGAGATGGGTTTAGCGTTTGACGAGCAAGATTTGCAGTATTACACC AGGCTGGGCTTACTGTTTTGGATGCCTTGA
AA sequence Show only first row Show all	>Lus10040272 pacid=23174083 polypeptide=Lus10040272 locus=Lus10040272.g ID=Lus10040272.BGIv1.0 annot-version=v1.0 MDAHLVVQNFKIIDKELVEFREIMRRCQEGTQGQTLFLNRNSPLNRRNQLILGTLRAGRRAVSLRCSSTSPKVSALVSGGVGNSVDEQPRFSDKPTEEVI HFYRVPFIQESATLELLKSAQIKVSNDIVGLQTEQCFNVELTSQLSSDKLAVLGWLLQETYEPENLGTESFLEKKRREGLSTVIVEVGPRLSFTTAWSAN AVSICSACGLNEVTRLERSKRYLLYSKGPLLDYQINEFASMVHDRMTECVYIQKLTSFTTSVVPEEVRFVPVMERGREALEEINQEMGLAFDEQDLQYYT RLGLLFWMP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10040272 [exp]	0	1
AT4G37330		CYP81D4	"cytochrome P450, family 81, s...		Lus10024817 [exp]	15.7	0.5969
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10013728 [exp]	22.2	0.5969
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10012854 [exp]	27.2	0.5969
AT4G34760			SAUR-like auxin-responsive pro...		Lus10026296 [exp]	30.7	0.5554
					Lus10026928 [exp]	31.4	0.5969
AT2G46150			Late embryogenesis abundant (L...		Lus10027177 [exp]	35.1	0.5969
					Lus10020595 [exp]	43.5	0.5673
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10040273 [exp]	50.3	0.4437
AT4G20040			Pectin lyase-like superfamily ...		Lus10008272 [exp]	65.8	0.5103
AT1G71960		ATABCG25, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10006046 [exp]	67.8	0.4580

Compare expression of checked genes

Lus10040272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.