Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74260 884 / 0 PUR4 purine biosynthesis 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012890 [exp] 1003 / 0 AT1G74260 2323 / 0.0 purine biosynthesis 4 (.1) Lus10030542 [exp] 994 / 0 AT1G74260 2303 / 0.0 purine biosynthesis 4 (.1) Lus10004706 [exp] 923 / 0 AT1G74260 2253 / 0.0 purine biosynthesis 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G200200 [exp] 931 / 0 AT1G74260 2285 / 0.0 purine biosynthesis 4 (.1) Potri.008G058600 [exp] 335 / 3e-103 AT1G74260 1642 / 0.0 purine biosynthesis 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02769 [flax] [poplar] AIRS_C AIR synthase related protein, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10040273 pacid=23174198 polypeptide=Lus10040273 locus=Lus10040273.g ID=Lus10040273.BGIv1.0 annot-version=v1.0 ATGGCAAGATTGGCAGTTGGAGAAGCACTCACAAATTTGGTTTGGGCGAAAGTTACATCTCTTTCTGATGTTAAAGCAAGTGGAAATTGGATGTATGCTG CCAAGCTTGATGGAGAAGGAGCTGATATGTATGATGCTGCAATAGCTCTGTCAGAAGCTATGTTTGAACTTGGCACTGCAATTGATGGTGGAAAGGACAG TCTCTCAATAGCAGCTCACGCAGGGGATGAGGTTGTTAAGGCTCCTGGTAATCTGGTTATTAGTACCTATGTCACTTGTCCCGACATTACCAAAACCGTC ACTCCTGATCTGAAGTTGGGGAATGACGGTGTTCTGCTTCATATTGATTTGGGTAAGGGAAATCAACGTTTAGGTGGTTCTGCACTTGCTCAGGCTTTTG ATCAAGTTGGATACGACTGTCCTGATCTTGAGGATGTTTCTTATCTTAAGAAGGTATTTGGTGGTGTCCAGAATCTAATTACCGATGAGCTCATCTTATC CGGTCATGATATCAGTGATGGTGGCTTACTGGTCTGTGCATTAGAAATGGCATTCGCTGGGAATCGTGGCATTACTTTGGACTTGCAGTCACATGAAGTT ATTGGTCAAGTTGCTACTTCTCCATTGGTGGAACTCATTGTTGATGGCCAAACTCAATTGAGAGAGGAGACTTCATTTCTCAGAGACATGTGGGAGGACA CCAGTTTTCAGCTAGAAAAGCTTCAAAGATTGGCTTCTTGTGTGGAGTCAGAGAAAGAGGGTTTAAAATACAGACATGACCCGTTGTGGAAACTATCTTT CTCCCCATGTCTTACAGATAAAAAATATCTTACTGCTACTTCTAAATCGAAAGTTGCCATAATCCGAGAGGAAGGAAGCAATGGAGACAGGGAAATGTCA GCTGCATTCTGCGCTGCTGGGTTTGAACCATGGGATATAGCAATGTCTGATCTCCTTAGTGGAGCAGCATCTCTTGGCGAATTCCGGGGTATTGTGTTTG TGGGAGGTTTTAGCTACGCTGATGTGCTCGATTCTGCAAAAGGTTGGTCTGCTTCCATCCGATTCAACCAGCCTCTGTTGGCCCAATTCCAGGAATTCTA CAAGCGGCCAGATACTTTCAGTCTCGGTATTTGCAACGGTTGTCAGCTCATGGCTCTTTTGGGGTGGGTTCCTGGTCCCAAAGTTGGCGGTGTGCTTGGA GGTGGAGGTGATCCTTCACAGCCAAGATTTTTTCACAACGAGTCCGGTCGATTCGAGTGCCGGTTCACAAGTGTGACGATACAAGAGTCCCCCTCTGTAA TGCTCAAAGGAATGGAAGGAAGTACACTCAGGGTATGGGCAGCCCATGGCGAGGGGAGGGCGTACTTCCCGGATGACGGTGTTCTTGACCGTGTTATTCA TTCAAACTTGGCGCCTGTGAGATATGCTGATGACGATGGAAATCCGACCGAGTCTTACCCGTTTAACGTAAATGGCTCTCCATTAGGAGTGGCTGCAATC TGTTCTCCTGATGGGAGGCATCTTGCCATGATGCCTCATCCAGAGCGTTGCTTCTTAATGTGGCAATTCCCTTGGTACCCGACCCACTGGGATGTGGACA AGAAAGGCCCTAGTCCATGGTTAAAGATGTTTCAGAATGCCAGAGAATGGTGCTCTTGA
AA sequence Show only first row Show all	>Lus10040273 pacid=23174198 polypeptide=Lus10040273 locus=Lus10040273.g ID=Lus10040273.BGIv1.0 annot-version=v1.0 MARLAVGEALTNLVWAKVTSLSDVKASGNWMYAAKLDGEGADMYDAAIALSEAMFELGTAIDGGKDSLSIAAHAGDEVVKAPGNLVISTYVTCPDITKTV TPDLKLGNDGVLLHIDLGKGNQRLGGSALAQAFDQVGYDCPDLEDVSYLKKVFGGVQNLITDELILSGHDISDGGLLVCALEMAFAGNRGITLDLQSHEV IGQVATSPLVELIVDGQTQLREETSFLRDMWEDTSFQLEKLQRLASCVESEKEGLKYRHDPLWKLSFSPCLTDKKYLTATSKSKVAIIREEGSNGDREMS AAFCAAGFEPWDIAMSDLLSGAASLGEFRGIVFVGGFSYADVLDSAKGWSASIRFNQPLLAQFQEFYKRPDTFSLGICNGCQLMALLGWVPGPKVGGVLG GGGDPSQPRFFHNESGRFECRFTSVTIQESPSVMLKGMEGSTLRVWAAHGEGRAYFPDDGVLDRVIHSNLAPVRYADDDGNPTESYPFNVNGSPLGVAAI CSPDGRHLAMMPHPERCFLMWQFPWYPTHWDVDKKGPSPWLKMFQNAREWCS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10040273 [exp]	0	1
AT1G48570			zinc finger (Ran-binding) fami...		Lus10009681 [exp]	1.0	0.6533
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10040272 [exp]	50.3	0.4437
AT3G18240			Ribosomal protein S24/S35, mit...		Lus10012470 [exp]	104.5	0.4341
AT5G03050			unknown protein		Lus10030557 [exp]	113.7	0.4323
AT2G47770		ATTSPO	TSPO(outer membrane tryptophan...		Lus10037513 [exp]	114.4	0.4338
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10003345 [exp]	145.0	0.4107
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10003585 [exp]	145.6	0.4107
AT3G05950			RmlC-like cupins superfamily p...		Lus10035280 [exp]	146.1	0.4107
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10013268 [exp]	146.7	0.4107
					Lus10014650 [exp]	152.4	0.4090

Compare expression of checked genes

Lus10040273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.