Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55550 683 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 566 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 531 / 0 RLK receptor lectin kinase (.1) AT4G02410 529 / 2e-180 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 520 / 6e-177 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 513 / 2e-174 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 498 / 2e-168 Concanavalin A-like lectin protein kinase family protein (.1) AT3G59700 481 / 5e-162 LECRK1, ATHLECRK LECTIN-RECEPTOR KINASE 1, lectin-receptor kinase (.1) AT2G43700 473 / 1e-158 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45430 471 / 9e-158 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010867 [exp] 702 / 0 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10024365 [exp] 699 / 0 AT3G55550 711 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004710 [exp] 636 / 0 AT3G55550 486 / 7e-169 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 589 / 0 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029315 [exp] 565 / 0 AT3G53810 758 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 563 / 0 AT2G37710 755 / 0.0 receptor lectin kinase (.1) Lus10008597 [exp] 560 / 0 AT3G53810 771 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 554 / 0 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016506 [exp] 553 / 0 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G200600 [exp] 766 / 0 AT3G55550 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.008G058400 [exp] 727 / 0 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.016G101000 [exp] 716 / 0 AT3G55550 704 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088680 [exp] 620 / 0 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088600 [exp] 620 / 0 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088900 [exp] 606 / 0 AT2G37710 801 / 0.0 receptor lectin kinase (.1) Potri.006G088632 [exp] 595 / 0 AT2G37710 770 / 0.0 receptor lectin kinase (.1) Potri.006G088400 [exp] 594 / 0 AT2G37710 800 / 0.0 receptor lectin kinase (.1) Potri.006G088648 [exp] 568 / 0 AT2G37710 710 / 0.0 receptor lectin kinase (.1) Potri.001G244000 [exp] 567 / 0 AT3G53810 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10040276 pacid=23174092 polypeptide=Lus10040276 locus=Lus10040276.g ID=Lus10040276.BGIv1.0 annot-version=v1.0 ATGTCCCCCAATCTACTGCTCCTCATCCTCTTCTTTTATCTCATTCCCACTCAATCTCACCTCTTCTTCCAAGGATTCAGACAATCACCCACCACCACCG GCAACCTCACCTTAAACGGAGCTTCCCAAATCGAAAGGAACGGCTTACTCCGACTAACAAACACCACCCGACGGTTAATCGGCCACGCTTTCTACTCATC ACCCTTCCGCCTAAAGATCAAGAAAAAAGCTCTCTCCTTTTCCGTCGCCTTCGCCTTCGCCATAGTCCCCGAGTACCCAAAGCTCGGCGGCCATGGCTTG GCATTCACTCTCTCCTCCACACCAACTCACCTCCTCCTCCCCAACGCCCTCCCCAGCCAGTACCTAGGCCTATTCAACTCCAACGACGTCGGAAACCTCA CCAACCACATTCTCGCCGTCGAATTCGACACTGTCCAGGATTTCGAGTTCGGCGACATCAACGATAACCACGTCGGAATCGATTTAGACGGTCTTCGCTC GAACAAATCAGTCGCCACTGATTTGAATCTGAAAAGCGGAAAACCGATTCAAGCTTGGATTGATTACGATTCCGGCAAGAATCTACTGGAAGTAAGACTT GCCCCTTCTTCTGATAAACCTAAATCCCCAATCTTATCGTTTCATGTAGATCTTTCTCCGGTTTTCCTCGATTACATGTTCGTTGGATTCTCTGCTTCCA CTGGATTGTTAGCGAGTAGTCACTACGTTCTTGGATGGAGCTTTAGTATCAATGGAGGAGAAGCCAAATCTTTATCCCTTTCCAAATTGCCTACGCTTCC CGGATCCAAAAAAGGAAACAACGGTCTTTTAATCGTAGGAATACCAATTTCTATGGTAATCGTAATAATGGCTGCTGTTGCTGCTTTTTACCTGATTAGA AAGATGAGGACTAATGCCGATGTGATTGAAGATTGGGAGCTTGACGTCGGTCCTCATCGGTTTAATTACATCGAGCTGAAGAAAGCAACCAAAGGATTCA GAGAAAAGGAGCTCCTCGGATTTGGAGGGTTTGGCAAAGTTTACAAAGGCACATTACCAAACTCCAATACTCAAGTTGCTGTTAAGAGAATTTCACATGA GTCCAAACAAGGATTCAGAGAGTTTGCTTCCGAGATTTCGACGATGGGTCGTCTTCGCCATAGGAATCTAGTTCAGCTGATTGGATGGTGTCGTAACAGA CAAGATTTGCTTCTTGTTTACGATTACATGCCGAATGGAAGCTTGGATCGCTACTTATTTGATCATGATCATGATCGGGTACTAAGTTGGGAGCAAAGGT ATAGGATCTTGAAAGGTGTAGCGTCGGGGATTTTGTACTTGCATGAAGAATGGGAGCAAGCTGTGATCCACAGAGATGTCAAGGCCGGGAATGTGCTGTT GGATTCCGAATTTCAAGGGAGGCTTGGCGATTTCGGGCTGGCCAAGCTCTACGAGCATGGCTCTAACCCGGGGACCACGAGGGTGGTGGGGACGTTGGGT TATTTAGCGCCGGAGTTGACTCGAACGGGGAAGCCAACCACAAGCTCGGACGTGTTTGCGTTCGGTTCGGTTTTGCTCGAGGTGGTGTGTGGGAGGAGGC CGATCGAGCCTAAGGCGTTGCCCGAGGAGCTTATATTGGTGGACTGGGTTTGGGAGAAGTGGAGGAGCGGTTGTGTGCTGGATGTGGTTGATTCGAAACT AAATGGTGAGTTTGATGAGGTTGAGGTTGTTGTTGTTGTGAAGTTGGGGCTGATGTGCTTGAATGATTCGCCCGAGGAAAGGCCATCGATGAGGCAGGTT GTTCGGTATTTGGATGGAGAGGTTGGATTGCCTGAACTTGTTGCATTCGATGCAAAGAAAGGGAATGATGGTAACTGCGATGGGAGTAAGGTGAGGATGA GCTTTAACTCGAACTCGAACTCGTATCCATCATACTTCGAAAAGGTAAGTACTTGGTCATCTGCAGGAGATTATGGTGATGGTGGTGATGTTGAAGCTGG TTCTGCATCACCACTTTCGCTTGCTAGTGGAAGCGAGCTTAGATAG
AA sequence Show only first row Show all	>Lus10040276 pacid=23174092 polypeptide=Lus10040276 locus=Lus10040276.g ID=Lus10040276.BGIv1.0 annot-version=v1.0 MSPNLLLLILFFYLIPTQSHLFFQGFRQSPTTTGNLTLNGASQIERNGLLRLTNTTRRLIGHAFYSSPFRLKIKKKALSFSVAFAFAIVPEYPKLGGHGL AFTLSSTPTHLLLPNALPSQYLGLFNSNDVGNLTNHILAVEFDTVQDFEFGDINDNHVGIDLDGLRSNKSVATDLNLKSGKPIQAWIDYDSGKNLLEVRL APSSDKPKSPILSFHVDLSPVFLDYMFVGFSASTGLLASSHYVLGWSFSINGGEAKSLSLSKLPTLPGSKKGNNGLLIVGIPISMVIVIMAAVAAFYLIR KMRTNADVIEDWELDVGPHRFNYIELKKATKGFREKELLGFGGFGKVYKGTLPNSNTQVAVKRISHESKQGFREFASEISTMGRLRHRNLVQLIGWCRNR QDLLLVYDYMPNGSLDRYLFDHDHDRVLSWEQRYRILKGVASGILYLHEEWEQAVIHRDVKAGNVLLDSEFQGRLGDFGLAKLYEHGSNPGTTRVVGTLG YLAPELTRTGKPTTSSDVFAFGSVLLEVVCGRRPIEPKALPEELILVDWVWEKWRSGCVLDVVDSKLNGEFDEVEVVVVVKLGLMCLNDSPEERPSMRQV VRYLDGEVGLPELVAFDAKKGNDGNCDGSKVRMSFNSNSNSYPSYFEKVSTWSSAGDYGDGGDVEAGSASPLSLASGSELR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55550			Concanavalin A-like lectin pro...		Lus10040276 [exp]	0	1
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10011234 [exp]	2.2	0.8116
AT4G00650		FLA, FRI	FLOWERING LOCUS A, FRIGIDA-lik...		Lus10022433 [exp]	2.8	0.8197
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004175 [exp]	3.0	0.8406
AT1G27970		NTF2B	nuclear transport factor 2B (....		Lus10032033 [exp]	8.2	0.8327
AT2G33410			RNA-binding (RRM/RBD/RNP motif...		Lus10043124 [exp]	9.2	0.8248
AT4G01400			unknown protein		Lus10002675 [exp]	9.5	0.7812
AT2G22240		ATIPS2, ATMIPS2	MYO-INOSITOL-1-PHOSTPATE SYNTH...		Lus10019671 [exp]	12.4	0.7917
AT4G26500		SUFE1, EMB1374,...	SULFUR E 1, MBRYO DEFECTIVE 13...		Lus10032905 [exp]	15.6	0.7983
AT3G51650			unknown protein		Lus10025247 [exp]	16.4	0.7926
AT5G19180		ECR1	E1 C-terminal related 1 (.1)		Lus10034043 [exp]	17.0	0.7985

Compare expression of checked genes

Lus10040276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.