Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06090 178 / 2e-50 ATGPAT7, GPAT7 glycerol-3-phosphate acyltransferase 7 (.1) AT3G11325 112 / 3e-27 Phospholipid/glycerol acyltransferase family protein (.1) AT1G01610 89 / 7e-19 ATGPAT4, GPAT4 glycerol-3-phosphate acyltransferase 4 (.1) AT4G00400 89 / 1e-18 AtGPAT8, GPAT8 glycerol-3-phosphate acyltransferase 8 (.1) AT2G38110 86 / 1e-17 ATGPAT6, GPAT6 glycerol-3-phosphate acyltransferase 6 (.1) AT1G06520 76 / 1e-14 ATGPAT1, GPAT1 glycerol-3-phosphate acyltransferase 1 (.1) AT4G01950 62 / 4e-10 ATGPAT3, GPAT3 glycerol-3-phosphate acyltransferase 3 (.1) AT1G02390 62 / 5e-10 ATGPAT2, GPAT2 ARABIDOPSIS THALIANA GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2, glycerol-3-phosphate acyltransferase 2 (.1) AT3G11430 0 / 1 ATGPAT5, GPAT5 glycerol-3-phosphate acyltransferase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004711 [exp] 235 / 9e-40 AT3G11430 743 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Lus10004835 [exp] 90 / 1e-20 AT2G38110 320 / 2e-108 glycerol-3-phosphate acyltransferase 6 (.1) Lus10036684 [exp] 92 / 8e-20 AT2G38110 558 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10002500 [exp] 89 / 7e-19 AT2G38110 683 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10017794 [exp] 86 / 8e-18 AT3G11430 392 / 5e-133 glycerol-3-phosphate acyltransferase 5 (.1) Lus10010741 [exp] 86 / 1e-17 AT2G38110 555 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10018832 [exp] 84 / 3e-17 AT3G11430 390 / 3e-132 glycerol-3-phosphate acyltransferase 5 (.1) Lus10002501 [exp] 84 / 3e-17 AT2G38110 330 / 2e-109 glycerol-3-phosphate acyltransferase 6 (.1) Lus10010934 [exp] 77 / 6e-15 AT1G06520 605 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G058200 [exp] 167 / 3e-46 AT5G06090 704 / 0.0 glycerol-3-phosphate acyltransferase 7 (.1) Potri.010G201200 [exp] 183 / 6e-37 AT3G11430 720 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Potri.016G063900 [exp] 110 / 4e-26 AT2G38110 533 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.006G198100 [exp] 108 / 3e-25 AT2G38110 527 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.006G097800 [exp] 92 / 6e-20 AT2G38110 809 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.016G113100 [exp] 91 / 2e-19 AT2G38110 789 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.014G085500 [exp] 89 / 6e-19 AT4G00400 757 / 0.0 glycerol-3-phosphate acyltransferase 8 (.1) Potri.005G202200 [exp] 78 / 3e-15 AT1G06520 650 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Potri.002G192600 [exp] 60 / 2e-09 AT4G01950 601 / 0.0 glycerol-3-phosphate acyltransferase 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040277 pacid=23174164 polypeptide=Lus10040277 locus=Lus10040277.g ID=Lus10040277.BGIv1.0 annot-version=v1.0 ATGGCATCATCCGAAGTCGTAGCGGAACTAGAAGGAACGCTCCTCAAGGACCCGGACCCGTTCTCCTACTTCATGCTCGTATCCTTCGAGGCGTCCGGCC TCTTCCGGTTCGTCGTCCTCCTCCTTCTCTGGCCCGTAATCCAGCTCCTCAACGCCTTCGGCATGAGAGACGCCGGGCTTAAAGTCATGGTATTCGTGGC CACTGTGGGTGTTCGAGTCTCGGAGATCGAGTCGGTGGCTAGAGCAGTGCTGCCGAAATTTTACATGGATGACGTGGACATGGGGGCTTGGAAGGTGTTT AGCTCGTGTGATAAAAGGGTGGTGGTGACTCGGACTCCCAGGGTTATGGTCGAGAGGTTTGTCAAGGACCACTTGCGAGCGGATGAAGTTGTTGGGTGGG AGTTGGTTGTGAACCGGTTTGGGTATGCGACCGGTTTGGTTGAGGAGCGTAGTGGTGATGTTGATGTGGTTGTGAGGAGTAGGGTGGGTGAACTGTTTGT TGACGAGTTGCCCGGTTTGGGACTTGGGCGGAAGTCTGCTACGGCAGGAACAAATGCACCCGCCATTCACGTTCACCGAAACCGACGACCAAGATCCAAA CTTAGTCCGCCCACTCCCAGTAATCTTCCACGACGGCCGCCTGGTCAAACGTCCGACGGCATCCACCGCCCTCCTCATCATCCTCTGGATGCCACTTGGC ATCATCCTAGCAATCCTCCGAATGGCGGTGGGGTCGATGCTCCCTTTCTGGGCAAAGCCCCACCTCTCCCGCGTACTTGGTGGCCAAGTAATCGTCAAGG GCAAGCCACCTCCACCCAGCTCCAACGGCGTCCTGTTCGTGTGCACCCACCGCACCCTAATGGACCCAGTAGTCCTAGCCACCGTGCTACAACGCCGCAT CCCGGCAGTTACATACTCCATCTCGCGGCTCTCCGAGATCCTCTCCCCGATCCCGACCGTCCGCCTCACGAGAATCCGCGAGGTGGACGCGGCCAGGATC AAGAGCGAGCTGTCCCAGGGAGATCTGGTGGTCTGCCCCGAGGGGACCACGTGCAGAGAGCCTTTTCTGCTGCGTTTCAGCGCGCTTTTCGCGGAGCTGA CGGACCAGATCGTCCCCGTGGCGATGAACTACCGAGTCGGCTGCCGGCGGAGGCCACGTGCTCTTCAGGGAAGAGCCCGCATGACGTGGCGAATTACGTG CAGCGAATCTTGGCGGCTACTTTGGGGTTCGAGTGTACGAATTTCACGAGGAAGGATAAGTACAGGATTCTGGCTGGGAACGATGGAACGGTGTCGTATA CTTCTTTAGTTGACCAGGTCAAGAAGACGGTCAGCTCCACTAGCCCATTTTTCCATTAA
AA sequence Show only first row Show all	>Lus10040277 pacid=23174164 polypeptide=Lus10040277 locus=Lus10040277.g ID=Lus10040277.BGIv1.0 annot-version=v1.0 MASSEVVAELEGTLLKDPDPFSYFMLVSFEASGLFRFVVLLLLWPVIQLLNAFGMRDAGLKVMVFVATVGVRVSEIESVARAVLPKFYMDDVDMGAWKVF SSCDKRVVVTRTPRVMVERFVKDHLRADEVVGWELVVNRFGYATGLVEERSGDVDVVVRSRVGELFVDELPGLGLGRKSATAGTNAPAIHVHRNRRPRSK LSPPTPSNLPRRPPGQTSDGIHRPPHHPLDATWHHPSNPPNGGGVDAPFLGKAPPLPRTWWPSNRQGQATSTQLQRRPVRVHPPHPNGPSSPSHRATTPH PGSYILHLAALRDPLPDPDRPPHENPRGGRGQDQERAVPGRSGGLPRGDHVQRAFSAAFQRAFRGADGPDRPRGDELPSRLPAEATCSSGKSPHDVANYV QRILAATLGFECTNFTRKDKYRILAGNDGTVSYTSLVDQVKKTVSSTSPFFH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11430		ATGPAT5, GPAT5	glycerol-3-phosphate acyltrans...		Lus10040277 [exp]	0	1
AT5G13580		ABCG6	ATP-binding cassette G6, ABC-2...		Lus10001972 [exp]	1.0	0.9794
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Lus10039880 [exp]	2.0	0.9711
AT1G05450			Bifunctional inhibitor/lipid-t...		Lus10021911 [exp]	2.4	0.9704
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10014681 [exp]	3.5	0.9677
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10035621 [exp]	4.2	0.9567
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Lus10034813 [exp]	4.6	0.9650
AT4G38080			hydroxyproline-rich glycoprote...		Lus10033360 [exp]	5.0	0.9673
AT2G18360			alpha/beta-Hydrolases superfam...		Lus10041747 [exp]	6.0	0.9654
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Lus10008083 [exp]	7.0	0.8921
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Lus10017394 [exp]	8.1	0.9494

Compare expression of checked genes

Lus10040277 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.