Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59550 198 / 2e-61 zinc finger (C3HC4-type RING finger) family protein (.1) AT2G39720 191 / 6e-59 RHC2A RING-H2 finger C2A (.1) AT3G46620 190 / 2e-58 zinc finger (C3HC4-type RING finger) family protein (.1) AT3G56580 129 / 1e-35 RING/U-box superfamily protein (.1.2.3) AT2G40830 119 / 5e-32 RHC1A RING-H2 finger C1A (.1.2.3) AT3G19950 115 / 2e-30 RING/U-box superfamily protein (.1) AT3G13430 107 / 2e-27 RING/U-box superfamily protein (.1.2.3) AT3G10815 102 / 1e-26 RING/U-box superfamily protein (.1) AT1G55530 104 / 5e-26 RING/U-box superfamily protein (.1) AT5G01980 103 / 3e-25 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004712 [exp] 414 / 2e-146 AT5G59550 294 / 6e-97 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040783 [exp] 163 / 2e-49 AT5G59550 228 / 1e-72 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10024372 [exp] 136 / 3e-38 AT5G59550 197 / 5e-60 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10013235 [exp] 134 / 2e-37 AT2G40830 334 / 7e-115 RING-H2 finger C1A (.1.2.3) Lus10030755 [exp] 133 / 2e-37 AT2G40830 336 / 2e-115 RING-H2 finger C1A (.1.2.3) Lus10010179 [exp] 123 / 7e-34 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10010856 [exp] 124 / 3e-32 AT5G59550 120 / 3e-29 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10000023 [exp] 114 / 4e-31 AT5G59550 159 / 5e-47 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10001582 [exp] 105 / 8e-28 AT2G40830 178 / 2e-55 RING-H2 finger C1A (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G201300 [exp] 262 / 2e-86 AT2G39720 240 / 2e-75 RING-H2 finger C2A (.1) Potri.008G058100 [exp] 238 / 9e-77 AT5G59550 225 / 8e-70 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.006G087800 [exp] 231 / 2e-75 AT5G59550 258 / 1e-83 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.009G034800 [exp] 211 / 2e-67 AT3G46620 236 / 8e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G243300 [exp] 212 / 3e-67 AT3G46620 239 / 8e-76 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.006G032100 [exp] 128 / 2e-35 AT2G40830 327 / 1e-111 RING-H2 finger C1A (.1.2.3) Potri.016G029300 [exp] 124 / 1e-33 AT2G40830 317 / 9e-108 RING-H2 finger C1A (.1.2.3) Potri.005G090500 [exp] 117 / 1e-31 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.012G036700 [exp] 116 / 1e-30 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 115 / 2e-30 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10040278 pacid=23173800 polypeptide=Lus10040278 locus=Lus10040278.g ID=Lus10040278.BGIv1.0 annot-version=v1.0 ATGTCGTCGCCTGTGCCGTCCTACTGGTGCTACCGCTGCAACCGCTTCGTCCGAGTATGGAGCCGGACGCCAGATGAGGAGGACGATTCCGTTTCGTGCC CCGATTGCGAAGGCGGATTCGTTGAAGAGATCGAGAATCATCATCCGCACATGATCCCCGTGGAGACGGCACACCGCCGGAGGATCCCGCCGGCGACGTT CATGTCGGAGCATCGAAGAGGCAGGAGAGGCGGTGGAGGAGACAGGTCGCCGATTAATCCGGTCATCGTGATGCGCGGCGGAGCCGACAGTGGTAATTCC TTCACTGACGAGGGCGTTGCCGGCGGTGGTGGCCGTGGATTCGAGCTGTATTACGACGATGGCGGCGGTTCAGGCTTGAGGCCGTTGCCGCCGAGTATGT CGGAGTTCTTACTTGGGTCTGGATTCGAGAGGCTGATGGATCAGCTGTCGCAGATGGAACTGAACGGATTCAGTCGGCACGAGCATCCTCCAGCGTCTAA AGCGGCGATTGAATCGCTCCCGACTGTAACAATCAACAACACACACATTTCGATGGAGTCTCACTGTGCAGTGTGCAAGGAGCCTTTCGAATCGGAAACG GAGGCCCGTCAAATGCCGTGTAAGCATCTTTACCACTCGGATTGTATTCTCCCCTGGCTTTCTCTCCGCAATTCCTGCCCTGTCTGCCGCCACGAGTTGC CGGCGGCAGAGGAGGATCCGCTGGTCAACGAGGAGGGCGCTGAATAA
AA sequence Show only first row Show all	>Lus10040278 pacid=23173800 polypeptide=Lus10040278 locus=Lus10040278.g ID=Lus10040278.BGIv1.0 annot-version=v1.0 MSSPVPSYWCYRCNRFVRVWSRTPDEEDDSVSCPDCEGGFVEEIENHHPHMIPVETAHRRRIPPATFMSEHRRGRRGGGGDRSPINPVIVMRGGADSGNS FTDEGVAGGGGRGFELYYDDGGGSGLRPLPPSMSEFLLGSGFERLMDQLSQMELNGFSRHEHPPASKAAIESLPTVTINNTHISMESHCAVCKEPFESET EARQMPCKHLYHSDCILPWLSLRNSCPVCRHELPAAEEDPLVNEEGAE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10040278 [exp]	0	1
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10011143 [exp]	2.8	0.9516
AT3G08650			ZIP metal ion transporter fami...		Lus10035606 [exp]	6.0	0.9517
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10038977 [exp]	8.5	0.9051
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10041780 [exp]	9.2	0.9348
AT2G40280			S-adenosyl-L-methionine-depend...		Lus10017436 [exp]	9.3	0.9086
AT4G24110			unknown protein		Lus10001676 [exp]	11.1	0.9403
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10043044 [exp]	14.3	0.9443
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Lus10020788 [exp]	14.5	0.9054
AT1G74940			Protein of unknown function (D...		Lus10011923 [exp]	15.6	0.9253
AT3G52740			unknown protein		Lus10004872 [exp]	15.7	0.9319

Compare expression of checked genes

Lus10040278 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.