Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39710 566 / 0 Eukaryotic aspartyl protease family protein (.1) AT5G02190 490 / 4e-173 EMB24, ATASP38, PCS1 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) AT1G66180 239 / 3e-75 Eukaryotic aspartyl protease family protein (.1) AT5G37540 226 / 5e-70 Eukaryotic aspartyl protease family protein (.1) AT2G03200 143 / 2e-38 Eukaryotic aspartyl protease family protein (.1) AT1G01300 135 / 3e-35 Eukaryotic aspartyl protease family protein (.1) AT3G54400 129 / 1e-33 Eukaryotic aspartyl protease family protein (.1) AT5G07030 119 / 9e-30 Eukaryotic aspartyl protease family protein (.1) AT1G09750 119 / 9e-30 Eukaryotic aspartyl protease family protein (.1) AT1G25510 119 / 1e-29 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004713 [exp] 777 / 0 AT2G39710 567 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10002707 [exp] 668 / 0 AT2G39710 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10000514 [exp] 626 / 0 AT2G39710 541 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10024375 [exp] 537 / 0 AT5G02190 572 / 0.0 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Lus10010854 [exp] 275 / 4e-92 AT5G02190 294 / 4e-99 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Lus10010855 [exp] 239 / 1e-72 AT5G02170 501 / 2e-171 Transmembrane amino acid transporter family protein (.1.2) Lus10003999 [exp] 145 / 7e-39 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10035961 [exp] 128 / 8e-33 AT2G03200 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10029913 [exp] 127 / 8e-33 AT5G33340 291 / 2e-94 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G201400 [exp] 627 / 0 AT2G39710 583 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.008G058000 [exp] 615 / 0 AT2G39710 607 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G087600 [exp] 543 / 0 AT5G02190 548 / 0.0 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Potri.017G131800 [exp] 254 / 6e-81 AT1G66180 570 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.004G085000 [exp] 242 / 5e-76 AT1G66180 605 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G087550 [exp] 216 / 3e-69 AT5G02190 234 / 8e-76 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 144 / 6e-39 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 140 / 3e-37 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 130 / 2e-33 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.003G195500 [exp] 129 / 2e-33 AT3G54400 559 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10040279 pacid=23173985 polypeptide=Lus10040279 locus=Lus10040279.g ID=Lus10040279.BGIv1.0 annot-version=v1.0 ATGCTGTTCCACCACAACGTCTCCCTAACCGTCTCCCTAACGGTCGGGTCGCCGCCGCAAACCGTCACGATGGTGCTCGACACCGGCAGCGAACTCTCCT GGCTCCGTTGCCGGAAAACCCCTGGCTTCAATTCCATATTCGATCCCCTGGCTTCGAAATCTTACGTCAAGGTCCCTTGCGCTTCACCGACTTGCCGGAC TCGAACCCGGGACCTAACCATACCGGTATCTTGCGACCCGAAGAAGCTCTGCCACGTCATCGTGTCCTACGCGGACGCCACGTCCATCGAAGGGACCCTC GCTTTCGAAACGTTCCGGATCGGGTCGATGTCGAGGCAGGGGACTCTGTTCGGGTGTATGGATTCGGGTTTCAGCTCCAATTCGGAAGAGGACGCCAAAT CGACCGGGTTGTTGGGTATGAACCGTGGGTCGCTGTCATTCATCAACCAAATGGGCTACCCAAAATTCTCATATTGTATCTCGAGCATCGACTCGTCGGG TGTTTTGCTTCTCGGGGACGCTAAATTCTCGTGGTTGAAACCGCTCAGCTACACTCCGATGGTTCGAATCAACGACCCTTTGCCCTACTTTGACCGGGTC GCTTACACCGTCCAGCTGGAGGGCATAAAGGTAAACAACAAGGTGTTACCCTTACCGAAATCGGCTTTCCAACCGGACCACACCGGAGCGGGCCAGACCA TGGTTGACTCAGGCACCCAATTCAGTTTCTTGTTGGGACCCGTGTACACGGCTTTGAGGGCCGAGTTTCTCTCTCAAACGGCGGGAAAATTGAGGGTGTT GAACGATGTGAATTACGTGTTTCAAGGCGCCATGGATTTGTGCTATTTAATCGATTCGACACAAAAAGTGGTCCCGCCAGGATTACCAACCGTCACTATG ATGTTTCAAGGTGCGGAAATGAGTTTGGCTGATGACAAATTGTTGTACCGGGTGGCAGGCGATACGAAGGGGAAGGATTCGGTATGGTGCTTCACATTCG GAAACTCTGAATTGTTAGGAATCGAGGCGTTCTTGATCGGACACCACCATCAACAGAATGTCTGGATGGAGTATGATCTAGCCAACTCTAGGATCGGTCT TGCGGAGGTCAAGTGTGACGATGCACGTCAACAACTTGGTTTGCATGGGTAG
AA sequence Show only first row Show all	>Lus10040279 pacid=23173985 polypeptide=Lus10040279 locus=Lus10040279.g ID=Lus10040279.BGIv1.0 annot-version=v1.0 MLFHHNVSLTVSLTVGSPPQTVTMVLDTGSELSWLRCRKTPGFNSIFDPLASKSYVKVPCASPTCRTRTRDLTIPVSCDPKKLCHVIVSYADATSIEGTL AFETFRIGSMSRQGTLFGCMDSGFSSNSEEDAKSTGLLGMNRGSLSFINQMGYPKFSYCISSIDSSGVLLLGDAKFSWLKPLSYTPMVRINDPLPYFDRV AYTVQLEGIKVNNKVLPLPKSAFQPDHTGAGQTMVDSGTQFSFLLGPVYTALRAEFLSQTAGKLRVLNDVNYVFQGAMDLCYLIDSTQKVVPPGLPTVTM MFQGAEMSLADDKLLYRVAGDTKGKDSVWCFTFGNSELLGIEAFLIGHHHQQNVWMEYDLANSRIGLAEVKCDDARQQLGLHG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39710			Eukaryotic aspartyl protease f...		Lus10040279 [exp]	0	1
AT2G36090			F-box family protein (.1)		Lus10021330 [exp]	3.7	0.8968
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010045 [exp]	5.3	0.9137
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10004202 [exp]	6.5	0.8896
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10013676 [exp]	7.3	0.8821
					Lus10002087 [exp]	7.5	0.9098
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10021428 [exp]	10.5	0.9036
					Lus10003852 [exp]	10.6	0.8940
AT5G61830			NAD(P)-binding Rossmann-fold s...		Lus10001968 [exp]	10.6	0.9058
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10021320 [exp]	10.7	0.8995
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025068 [exp]	11.2	0.9095

Compare expression of checked genes

Lus10040279 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.