Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55520 241 / 3e-82 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G48570 103 / 6e-26 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G25230 93 / 4e-22 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT5G48580 83 / 3e-20 FKBP15-2 FK506- and rapamycin-binding protein 15 kD-2 (.1) AT3G25220 82 / 5e-20 FKBP15-1 FK506-binding protein 15 kD-1 (.1) AT5G64350 75 / 1e-17 FKP12, ATFKBP12, FKBP12 ARABIDOPSIS THALIANA FK506-BINDING PROTEIN 12, FK506-binding protein 12 (.1) AT4G25340 76 / 4e-16 ATFKBP53 FK506 BINDING PROTEIN 53 (.1.2) AT5G05420 71 / 9e-16 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G54010 63 / 1e-11 DEI1, PAS1 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) AT5G45680 55 / 2e-09 ATFKBP13 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004714 [exp] 294 / 8e-103 AT3G55520 265 / 3e-91 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10003171 [exp] 99 / 4e-24 AT3G25230 871 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10002338 [exp] 98 / 1e-23 AT3G25230 874 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10038216 [exp] 94 / 2e-22 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10025888 [exp] 94 / 3e-22 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10025889 [exp] 86 / 2e-21 AT5G48580 196 / 1e-65 FK506- and rapamycin-binding protein 15 kD-2 (.1) Lus10003170 [exp] 86 / 3e-21 AT3G25220 226 / 4e-77 FK506-binding protein 15 kD-1 (.1) Lus10002339 [exp] 85 / 4e-21 AT3G25220 227 / 1e-77 FK506-binding protein 15 kD-1 (.1) Lus10038215 [exp] 86 / 1e-19 AT3G25210 368 / 4e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G201600 [exp] 247 / 2e-84 AT3G55520 219 / 2e-73 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.008G057900 [exp] 243 / 6e-83 AT3G55520 236 / 7e-80 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.014G149400 [exp] 101 / 4e-25 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G248300 [exp] 97 / 2e-23 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Potri.006G033400 [exp] 88 / 2e-20 AT5G48570 596 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G248200 [exp] 82 / 6e-20 AT5G48580 228 / 1e-77 FK506- and rapamycin-binding protein 15 kD-2 (.1) Potri.007G113100 [exp] 73 / 5e-17 AT5G64350 201 / 1e-68 ARABIDOPSIS THALIANA FK506-BINDING PROTEIN 12, FK506-binding protein 12 (.1) Potri.012G129200 [exp] 76 / 4e-16 AT4G25340 344 / 1e-113 FK506 BINDING PROTEIN 53 (.1.2) Potri.015G130900 [exp] 75 / 7e-16 AT4G25340 204 / 1e-59 FK506 BINDING PROTEIN 53 (.1.2) Potri.002G117200 [exp] 68 / 2e-13 AT5G48570 553 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [flax] [poplar] FKBP PF00254 [flax] [poplar] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase
Representative CDS sequence Show only first row Show all	>Lus10040280 pacid=23174051 polypeptide=Lus10040280 locus=Lus10040280.g ID=Lus10040280.BGIv1.0 annot-version=v1.0 ATGGACGATGTGATTGATTTAACTGGAGATGGAGGTGTCATGAAGAAGATCGTGAGGCGTGCAAAAGCTGATGCACTTGAGCCTTCAGAGGATCTTCCTC TCGTTGATGTTCATTACGAGGGCACATTGGCCGACACTGGCGAAGTCTTCGATACCACACATGAAGACAATAGCATCTTCTCATTTGAAATAGGAAGCGG TTCAGTTATTCGAGCCTGGGACGCTGCATTGCGAACTATGAAGGTTGGGGAGGTTGCGAAGATCACTTGCAAGCCAGAGTACGCCTACGGAAGCGCAGGC TCTCCACCAGATATTCCACCAGATGCGACGCTTGTGTTTGAGGTGGAGCTAGTGGCTTGCCGGCCTCGTAAAGGTTCCAGTGCTAGCAGTGTTTCGGAGG AGAGAACTAGGCTAGAAGAGCTGAAGAAGCAGCGGGAGATGGCGGCTGCAACTAAAGAGGAAGAGAAGAAGAAGAGAGAAGAAGCCAAAGCTGCCGCGGC TGCTCGAGTTCAAGCTAAACTAAACGCGAAGAAGGGTCCGGGGAAGGGGAAAGGCAAATCGAAATGA
AA sequence Show only first row Show all	>Lus10040280 pacid=23174051 polypeptide=Lus10040280 locus=Lus10040280.g ID=Lus10040280.BGIv1.0 annot-version=v1.0 MDDVIDLTGDGGVMKKIVRRAKADALEPSEDLPLVDVHYEGTLADTGEVFDTTHEDNSIFSFEIGSGSVIRAWDAALRTMKVGEVAKITCKPEYAYGSAG SPPDIPPDATLVFEVELVACRPRKGSSASSVSEERTRLEELKKQREMAAATKEEEKKKREEAKAAAAARVQAKLNAKKGPGKGKGKSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55520			FKBP-like peptidyl-prolyl cis-...		Lus10040280 [exp]	0	1
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10007318 [exp]	2.0	0.9517
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10029268 [exp]	2.8	0.9473
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10029269 [exp]	7.7	0.9429
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10014418 [exp]	8.7	0.9339
AT3G03720		CAT4	cationic amino acid transporte...		Lus10005687 [exp]	12.2	0.9428
AT4G29890			choline monooxygenase, putativ...		Lus10008571 [exp]	13.7	0.9361
AT4G30340		ATDGK7	diacylglycerol kinase 7 (.1)		Lus10015514 [exp]	14.7	0.9394
AT5G49525			unknown protein		Lus10017078 [exp]	15.9	0.9383
AT4G35110			Arabidopsis phospholipase-like...		Lus10026277 [exp]	18.7	0.9408
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10023921 [exp]	19.5	0.9338

Compare expression of checked genes

Lus10040280 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.