Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12380 446 / 4e-151 ATARP5 actin-related protein 5 (.1.2) AT3G12110 166 / 4e-47 ACT11 actin-11 (.1) AT2G42100 166 / 7e-47 Actin-like ATPase superfamily protein (.1) AT5G09810 164 / 3e-46 ACT2/7, ACT7 actin 7 (.1) AT3G53750 164 / 3e-46 ACT3 actin 3 (.1) AT2G37620 164 / 3e-46 AAC1, ACT1 ARABIDOPSIS ACTIN 1, actin 1 (.1.2) AT3G18780 161 / 4e-45 FIZ2, LSR2, ENL2, DER1, ACT2 LIGHT STRESS-REGULATED 2, FRIZZY AND KINKED SHOOTS 2, ENHANCER OF LRX1 2, DEFORMED ROOT HAIRS 1, actin 2 (.1.2) AT1G49240 160 / 4e-45 FIZ1, ACT8 FRIZZY AND KINKED SHOOTS, actin 8 (.1) AT3G46520 159 / 2e-44 ACT12 actin-12 (.1) AT5G59370 157 / 7e-44 ACT4 actin 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023400 [exp] 856 / 0 AT3G12380 456 / 2e-155 actin-related protein 5 (.1.2) Lus10005819 [exp] 166 / 4e-47 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005820 [exp] 166 / 4e-47 AT5G09810 778 / 0.0 actin 7 (.1) Lus10006783 [exp] 166 / 4e-47 AT5G09810 778 / 0.0 actin 7 (.1) Lus10016558 [exp] 165 / 9e-47 AT3G12110 768 / 0.0 actin-11 (.1) Lus10040826 [exp] 165 / 9e-47 AT3G12110 768 / 0.0 actin-11 (.1) Lus10005457 [exp] 165 / 9e-47 AT3G12110 768 / 0.0 actin-11 (.1) Lus10006784 [exp] 165 / 2e-46 AT5G09810 769 / 0.0 actin 7 (.1) Lus10001694 [exp] 163 / 8e-46 AT3G12110 766 / 0.0 actin-11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G202000 [exp] 464 / 2e-158 AT3G12380 998 / 0.0 actin-related protein 5 (.1.2) Potri.019G010400 [exp] 166 / 5e-47 AT5G09810 774 / 0.0 actin 7 (.1) Potri.001G309500 [exp] 166 / 5e-47 AT5G09810 775 / 0.0 actin 7 (.1) Potri.010G204300 [exp] 165 / 8e-47 AT3G12110 733 / 0.0 actin-11 (.1) Potri.008G055500 [exp] 165 / 9e-47 AT3G12110 765 / 0.0 actin-11 (.1) Potri.006G192700 [exp] 164 / 2e-46 AT3G12110 767 / 0.0 actin-11 (.1) Potri.016G045500 [exp] 164 / 2e-46 AT3G12110 767 / 0.0 actin-11 (.1) Potri.006G139900 [exp] 160 / 2e-44 AT5G09810 554 / 0.0 actin 7 (.1) Potri.001G453600 [exp] 159 / 2e-44 AT5G09810 769 / 0.0 actin 7 (.1) Potri.011G148000 [exp] 148 / 2e-40 AT5G09810 731 / 0.0 actin 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00022 [flax] [poplar] Actin Actin
Representative CDS sequence Show only first row Show all	>Lus10040281 pacid=23174177 polypeptide=Lus10040281 locus=Lus10040281.g ID=Lus10040281.BGIv1.0 annot-version=v1.0 ATGCCATTCATATCGCAGATACAGAGGCAGTCCGATTACTCACTCATCCCTTCTGACACCCCAATCGTCATCGACAACGGCGCTTCCTATTTCCGCATCG GGTGGGCTGGAGAGACCGAACCTCGGATTATTTTCCGCAACATTGTCCAGAGGCCTCGCCATAAGGCCACCGGCGAGTCATTTTCTTTATTCACCTTGTC TTTGTATCCTGTTATTGTAGGTGAAACGGTGACTATTGTTGGTGACCATGACCCCGCATTACTGAGATACTTTGACTGCACTCGGTCTGGGCCGCGCTCT GCTTTCGAAAACAATGTTGTTTTCCAGTTTGAGATAATGGAATATATTCTCGACTTTGCGTTTGACCGGCTTGGAGCAAATGGTTCACAGATTGATCATC CTGTCCTGATCACTGAATGCGCCTGCAATCCAGTACATTCCCGCAGTAAAATGGCAGAGCTTTTGTTTGAGACGTATGGAGTTCCATCAGTTGCATTTGG GGTTGATGCGGCATTCAGCTACAAGTACAATCAACGGCAGGGAGTTTGCAATCAAGATGGGCTTGCTATATGCCCTGGATTTAATACAACCCACGTTATT CCTTTCATTGCTGGAGAGCCAGTTTATAAAGGATGTTCACGGACTAACATTGGTGGCTATCATGTTACTGACTACATGAAGCAACTGCTTGCACTGAAGT ACCCTCATCACTTGGCCCGATTTACATGGGAGAAGGTTGAAGACCTAAAAATGGAGCACTGCTATATTGCATCAAACTATGCTTCAGAAGCCCAGTTTTT TCAGGAAATAGACCCAACATTTGTGCCGAAATCAGAAGCAGGAACCTCCCAGCCTACTTCTGAGGTACCGAAGCTCCGTCCACTAACCCAGGAAGACTTC AAGATTGTGTTTGGGGTCGAAAGGTTTCGATGCCCTGAAATCCTGTTTAATCCCAACCTAGTGGGGATCGATCAGGCCGGGGTGGATGAGATGGCAGGAG TTTCGATCAGGAGGTTGCCGGACAAGGATGAGGAATTGGAGAAGAAATTGACGAGCTCGATTCTTATGACTGGCGGAAGCTGCTTGTATCCTGGTATGTG CGAGAGATTGGAAGCTGGGATTCGGATGATTCAGCCATGTGGAGCCCCGATTAAGGTAGCGAGAGCACTGGATCCGATTCTTGACGCTTGGCGAGGAGCT TCGGCATATGCTTCAGCAGTGCAGTTTCCGCAGCAAACCTTTACTAGGAAGGATTATCTTGAGAAAGGCGAAGATTGGCTTCGCGGATACAAGTTTCGGT ACAATTTGTAA
AA sequence Show only first row Show all	>Lus10040281 pacid=23174177 polypeptide=Lus10040281 locus=Lus10040281.g ID=Lus10040281.BGIv1.0 annot-version=v1.0 MPFISQIQRQSDYSLIPSDTPIVIDNGASYFRIGWAGETEPRIIFRNIVQRPRHKATGESFSLFTLSLYPVIVGETVTIVGDHDPALLRYFDCTRSGPRS AFENNVVFQFEIMEYILDFAFDRLGANGSQIDHPVLITECACNPVHSRSKMAELLFETYGVPSVAFGVDAAFSYKYNQRQGVCNQDGLAICPGFNTTHVI PFIAGEPVYKGCSRTNIGGYHVTDYMKQLLALKYPHHLARFTWEKVEDLKMEHCYIASNYASEAQFFQEIDPTFVPKSEAGTSQPTSEVPKLRPLTQEDF KIVFGVERFRCPEILFNPNLVGIDQAGVDEMAGVSIRRLPDKDEELEKKLTSSILMTGGSCLYPGMCERLEAGIRMIQPCGAPIKVARALDPILDAWRGA SAYASAVQFPQQTFTRKDYLEKGEDWLRGYKFRYNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12380		ATARP5	actin-related protein 5 (.1.2)		Lus10040281 [exp]	0	1
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10023091 [exp]	2.6	0.8823
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10034195 [exp]	6.2	0.8650
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10035444 [exp]	7.7	0.8313
					Lus10029394 [exp]	11.3	0.8532
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Lus10027018 [exp]	11.7	0.8747
AT5G20040		ATIPT9	ARABIDOPSIS THALIANA ISOPENTEN...		Lus10012051 [exp]	13.5	0.7892
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Lus10028387 [exp]	17.3	0.7930
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Lus10026269 [exp]	17.5	0.8360
AT4G25550			Cleavage/polyadenylation speci...		Lus10014987 [exp]	17.5	0.8195
AT2G47640			Small nuclear ribonucleoprotei...		Lus10030367 [exp]	18.2	0.8344

Compare expression of checked genes

Lus10040281 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.