Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13830 340 / 5e-120 FtsJ-like methyltransferase family protein (.1) AT4G25730 81 / 3e-17 FtsJ-like methyltransferase family protein (.1) AT5G01230 69 / 1e-13 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023402 [exp] 439 / 2e-158 AT5G13830 312 / 1e-108 FtsJ-like methyltransferase family protein (.1) Lus10040439 [exp] 79 / 2e-16 AT4G25730 938 / 0.0 FtsJ-like methyltransferase family protein (.1) Lus10023555 [exp] 78 / 2e-16 AT4G25730 941 / 0.0 FtsJ-like methyltransferase family protein (.1) Lus10017186 [exp] 64 / 7e-12 AT5G01230 589 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10021124 [exp] 50 / 4e-07 AT5G01230 536 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G202200 [exp] 369 / 4e-131 AT5G13830 310 / 6e-108 FtsJ-like methyltransferase family protein (.1) Potri.009G118400 [exp] 79 / 9e-17 AT4G25730 840 / 0.0 FtsJ-like methyltransferase family protein (.1) Potri.019G056300 [exp] 65 / 2e-12 AT5G01230 581 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01728 [flax] [poplar] FtsJ FtsJ-like methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10040283 pacid=23173887 polypeptide=Lus10040283 locus=Lus10040283.g ID=Lus10040283.BGIv1.0 annot-version=v1.0 ATGGTTGGTGCCGGCGCACCTGATTTCTTCTACAAAGAAGCCCAGCGTCTCGGCTACGTAGCACGCTCTGCTTTCAAGCTTCTTCAGATACAGAATAAGC ACAAGCTGATAACTCCTGGATCATCTGTTCTTGATCTGGGTTGCGCCCCGGGAGCTTGGCTTCAGGTGGCGTGCCAGAGCATAGGTCCATTAAAAAGTGG TGGGGCGGTAGTAGGAATTGATCTCAAGAAAGTGAAGGTTCCTTCAGCTCACTGTGATGCCAGGGTTCAGACTGTTTCAGCTGATGTGATGAAGCTTCCC AAGGATGAAGTTAGGGCTCTCTCCCCTAAGCAAAGAGGATTTTCGATCATATTATCAGACATGTGCCCTTCAGTCTCTGGGATTACAACCAAAGATGCAG CATTGTCCATGGAGCTAGGAATGCGAGCACTCGATCTCGCAGTTGGTAGAACAGCAGCATCAGTCCATCCTGATGATCAAGAAGCCGAATTGCTGGTAGA TGAATCATCTGCTTCTGATACAAATGGTAGAGGTGTACTGTTGTCGGGTGGCCACCTAGTAATCAAGCTTCTAGAGAGCGAGGATATCCAGGAATTCAGC AAGATTTGCAAGCCGCTCTTCAGAAAAGCGTCGTGGCTACGGCCCAAGGCAACACGATCGTCATCGAGAGAGATCTACTTGATATGTCAAGGCTTTCAGT AG
AA sequence Show only first row Show all	>Lus10040283 pacid=23173887 polypeptide=Lus10040283 locus=Lus10040283.g ID=Lus10040283.BGIv1.0 annot-version=v1.0 MVGAGAPDFFYKEAQRLGYVARSAFKLLQIQNKHKLITPGSSVLDLGCAPGAWLQVACQSIGPLKSGGAVVGIDLKKVKVPSAHCDARVQTVSADVMKLP KDEVRALSPKQRGFSIILSDMCPSVSGITTKDAALSMELGMRALDLAVGRTAASVHPDDQEAELLVDESSASDTNGRGVLLSGGHLVIKLLESEDIQEFS KICKPLFRKASWLRPKATRSSSREIYLICQGFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13830			FtsJ-like methyltransferase fa...		Lus10040283 [exp]	0	1
AT3G54200			Late embryogenesis abundant (L...		Lus10040941 [exp]	6.7	0.7962
AT5G59240			Ribosomal protein S8e family p...		Lus10025887 [exp]	7.3	0.8132
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Lus10041417 [exp]	9.7	0.7751
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10016992 [exp]	11.5	0.8042
AT5G13830			FtsJ-like methyltransferase fa...		Lus10023402 [exp]	13.8	0.7182
AT5G39680		EMB2744	EMBRYO DEFECTIVE 2744, Pentatr...		Lus10001483 [exp]	14.5	0.7319
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10018683 [exp]	14.5	0.7706
AT5G37530			NAD(P)-binding Rossmann-fold s...		Lus10012735 [exp]	16.6	0.7422
AT2G19385			zinc ion binding (.1)		Lus10027626 [exp]	18.5	0.7669
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10020612 [exp]	20.0	0.7888

Compare expression of checked genes

Lus10040283 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.