Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39700 413 / 1e-147 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT2G28950 412 / 1e-147 ATHEXPALPHA1.8, ATEXP6, ATEXPA6 ARABIDOPSIS THALIANA TEXPANSIN 6, expansin A6 (.1) AT3G55500 393 / 9e-140 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT2G37640 393 / 9e-140 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT5G02260 386 / 4e-137 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT1G69530 328 / 3e-114 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT5G56320 328 / 4e-114 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT5G05290 322 / 1e-111 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT2G03090 321 / 2e-111 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT2G40610 316 / 2e-109 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023407 [exp] 466 / 1e-168 AT2G39700 445 / 3e-160 expansin A4 (.1) Lus10040801 [exp] 426 / 7e-153 AT2G39700 456 / 1e-164 expansin A4 (.1) Lus10016533 [exp] 426 / 1e-152 AT2G39700 456 / 9e-165 expansin A4 (.1) Lus10024388 [exp] 399 / 4e-142 AT2G37640 430 / 3e-154 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Lus10034227 [exp] 333 / 4e-116 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10010841 [exp] 343 / 1e-115 AT2G37640 373 / 6e-127 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Lus10009917 [exp] 330 / 7e-115 AT2G40610 395 / 9e-141 expansin A8 (.1) Lus10036763 [exp] 329 / 2e-114 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10008603 [exp] 329 / 2e-114 AT2G40610 397 / 2e-141 expansin A8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G202500 [exp] 424 / 3e-152 AT2G39700 473 / 2e-171 expansin A4 (.1) Potri.009G031800 [exp] 423 / 1e-151 AT2G39700 453 / 1e-163 expansin A4 (.1) Potri.008G057100 [exp] 421 / 1e-150 AT2G39700 459 / 6e-166 expansin A4 (.1) Potri.001G240900 [exp] 419 / 5e-150 AT2G39700 449 / 6e-162 expansin A4 (.1) Potri.006G086100 [exp] 408 / 1e-145 AT2G37640 435 / 2e-156 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Potri.006G108000 [exp] 347 / 1e-121 AT2G40610 379 / 2e-134 expansin A8 (.1) Potri.016G135200 [exp] 344 / 2e-120 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.019G057500 [exp] 339 / 2e-118 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.008G088300 [exp] 325 / 6e-113 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.001G001100 [exp] 325 / 6e-113 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10040286 pacid=23173882 polypeptide=Lus10040286 locus=Lus10040286.g ID=Lus10040286.BGIv1.0 annot-version=v1.0 ATGAGGACTTCAGCTCTTTGTGCTCTGTCTTTTGCTCTGCTTTTCCTCTCTGCACAAATCATCATTGTCGAATCCCGAATCCCTGGAAATTACATGGGAG GCGCCTGGCAATCCGCCCACGCCACTTTCTACGGCGGCTCAGACGCCTCCGGGACAATGGGGGGAGCTTGTGGATACGGAAACCTGTACAGCCAAGGCTA CGGAGTAAACACCGCCGCACTAAGCACTGCACTCTTCAACAACGGACTGAGCTGCGGTGCATGCTTCGAGATAAAATGCGCAAACGACCCGCAGTGGTGC CATTCGGGCAGCCCTTCGATCCTCGTCACAGCCACAAACTTCTGCCCTCCCAATTTCGCCCAAGCCAGCGACAACGGTGGGTGGTGCAACCCTCCCCGCC CGCACTTCGACCTCGCAATGCCGATGTTCCTCAAGATCGCAGAGTACCGGGCCGGGATCGTGCCAGTGTCGTTCCGGAGGGTCGCATGTAGGAAGCAAGG AGGGATCAGGTTCACGATCAACGGGTTCAAGTACTTCAATTTGGTACTTGTGACGAACGTGGCCGGAGCAGGGGATGTTGTTAAAGTGTGGGTGAAAGGT TCCAAGACTGGTTGGATGAGTATGAGTCGGAATTGGGGTCAGAATTGGCAATCGAATTCGGTGTTGGCCGGACAGTCGCTGTCGTTCCGAGTTACTTCGA GTGATCGCCGGACTTCTACTTCTTGGAATATTGTTCCTGCTGGGTGGCAGTTTGGTCAGACTTTTACCGGCAAGAATTTCAGGGTCTAG
AA sequence Show only first row Show all	>Lus10040286 pacid=23173882 polypeptide=Lus10040286 locus=Lus10040286.g ID=Lus10040286.BGIv1.0 annot-version=v1.0 MRTSALCALSFALLFLSAQIIIVESRIPGNYMGGAWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPQWC HSGSPSILVTATNFCPPNFAQASDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFRRVACRKQGGIRFTINGFKYFNLVLVTNVAGAGDVVKVWVKG SKTGWMSMSRNWGQNWQSNSVLAGQSLSFRVTSSDRRTSTSWNIVPAGWQFGQTFTGKNFRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10040286 [exp]	0	1
AT3G44610			Protein kinase superfamily pro...		Lus10043435 [exp]	3.6	0.8634
AT1G71110			unknown protein		Lus10007962 [exp]	6.0	0.8255
AT2G19110		ATHMA4, HMA4	ARABIDOPSIS HEAVY METAL ATPASE...		Lus10006955 [exp]	6.0	0.7533
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10018489 [exp]	6.3	0.8051
AT5G10180		SULTR2;1, AST68	sulfate transporter 2;1, ARABI...		Lus10016806 [exp]	7.1	0.8417
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10024820 [exp]	7.5	0.8313
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10023407 [exp]	9.3	0.8576
AT4G22730			Leucine-rich repeat protein ki...		Lus10028916 [exp]	14.5	0.8298
AT4G31730		ATGDU1, GDU1	glutamine dumper 1 (.1)		Lus10020107 [exp]	20.9	0.7856
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10015080 [exp]	22.9	0.8213

Compare expression of checked genes

Lus10040286 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.