Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15910 158 / 6e-43 FDM1 factor of DNA methylation 1, XH/XS domain-containing protein (.1) AT4G00380 149 / 7e-40 FDM2 factor of DNA methylation 2, XH/XS domain-containing protein (.1) AT3G12550 148 / 2e-39 FDM3 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2) AT1G13790 142 / 5e-37 FDM4 factor of DNA methylation 4, XH/XS domain-containing protein (.1) AT3G48670 134 / 2e-34 RDM12, IDN2 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) AT3G29375 127 / 1e-33 XH domain-containing protein (.1.2) AT4G01780 128 / 5e-33 XH/XS domain-containing protein (.1) AT1G80790 127 / 3e-32 FDM5 factor of DNA methylation 5, XH/XS domain-containing protein (.1) AT5G59390 126 / 4e-32 XH/XS domain-containing protein (.1) AT4G01180 107 / 2e-25 XH/XS domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040288 [exp] 321 / 3e-108 AT1G15910 185 / 5e-53 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10000948 [exp] 161 / 4e-48 AT3G12550 193 / 2e-58 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2) Lus10037986 [exp] 170 / 2e-47 AT1G15910 645 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10009217 [exp] 169 / 9e-47 AT1G15910 639 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10002702 [exp] 167 / 3e-46 AT3G48670 669 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10000951 [exp] 167 / 3e-46 AT3G48670 670 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10002703 [exp] 160 / 3e-43 AT3G48670 495 / 3e-166 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10036870 [exp] 145 / 8e-40 AT1G15910 160 / 7e-44 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10026076 [exp] 145 / 2e-38 AT1G15910 608 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G202700 [exp] 165 / 3e-45 AT3G48670 716 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Potri.010G184800 [exp] 152 / 1e-40 AT1G13790 526 / 1e-178 factor of DNA methylation 4, XH/XS domain-containing protein (.1) Potri.003G181000 [exp] 139 / 2e-36 AT1G15910 626 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03469 [flax] [poplar] XH XH domain
Representative CDS sequence Show only first row Show all	>Lus10040287 pacid=23174000 polypeptide=Lus10040287 locus=Lus10040287.g ID=Lus10040287.BGIv1.0 annot-version=v1.0 ATGCAGGATTACTATCTTAGAGAAATTGAGCACTTGAAGGCCACAATTGTTCAACTGGAGTGTCACGTGGAATGGCAAGATCAATTGATACAACAGGTGG AAGAGAATAAAAAGCAGCAGCTTTCCAAAGAAGAAGATACAACTCGCAGTTTATTGGACCAAATGGAGAAGTTAAGAGAAAGCATGCAAGCTGAACATCT AGAGTATATAAGGATTTCAAGTGAGAAGTATGAAGCACCGAGAGAAAAGTCGGAGAAGTTAAGAGAAAGCATGCAATCTGAAAATCTAGATTATATAAGG GATTCAAATGACAAGTATGAAGCATTGAAAGAAATGTTGGAGGAAAAAGAAGAGGAACTGCAGCTTGCGGAAGACCATAACCGCATTCTAATGGTTAAGG AGTTTGCAGCGAACCAAGAACTTCAGGATGCTCGCAAAGAATTAATCGAAGGGTTGCAAGAAGTGATACGTCATACTCATGACCGTTTGTCAACTATCAG GATCAAGAGAATGGGGGAACTCAACGGCCAAGTTTTCTTTAAGGCTTGCGTTGGTAAGTTCTCTAGGGAGAAGGTAGAAGATGAAGCTACCGAGCTATGT TCGTTATGGAAACAACATTTGACAGATCCGAACTGGCATCCTTTCAAGATCACCGGAAACCAAACACCACATGAGGTGATTGATGAAGATGACCAGAAGC TGAAGGAGTTGAGGAATGTATATGGAGAAGGGGTGTATGATGCTGTGACAAAGAAGTTACTGGAGTTGAACCAGTACAACCCGAGCGGGAGGTACACGAT ACCTGAAGTGTGGAACTTGGAGGAACGAAGGAAAGCTAGCATGAAAGAAGTTGTTCATTATCTTATCAATGAGTTGAAGAGTGAGAAAGAAGTTGTTCAT GATCTTATCAATGAGTTGAAGAATGAGAAGACACGGAAGCGTAAAACAAGTGAGGAATCAGCCTCTCGGGGCACTATGATTTATCCCCACTATGGCAACG ATGCAGACAGAGAAAGCTCGATTATCATTCGTGTGATCGGGCAGCGGCCAGACAACCGTAGGGATGGTATCCACAGCCGCCGGGTTCTTTACCCCGTTGT CTACTGA
AA sequence Show only first row Show all	>Lus10040287 pacid=23174000 polypeptide=Lus10040287 locus=Lus10040287.g ID=Lus10040287.BGIv1.0 annot-version=v1.0 MQDYYLREIEHLKATIVQLECHVEWQDQLIQQVEENKKQQLSKEEDTTRSLLDQMEKLRESMQAEHLEYIRISSEKYEAPREKSEKLRESMQSENLDYIR DSNDKYEALKEMLEEKEEELQLAEDHNRILMVKEFAANQELQDARKELIEGLQEVIRHTHDRLSTIRIKRMGELNGQVFFKACVGKFSREKVEDEATELC SLWKQHLTDPNWHPFKITGNQTPHEVIDEDDQKLKELRNVYGEGVYDAVTKKLLELNQYNPSGRYTIPEVWNLEERRKASMKEVVHYLINELKSEKEVVH DLINELKNEKTRKRKTSEESASRGTMIYPHYGNDADRESSIIIRVIGQRPDNRRDGIHSRRVLYPVVY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10040287 [exp]	0	1
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10011998 [exp]	1.4	0.9950
AT3G56570			SET domain-containing protein ...		Lus10029539 [exp]	2.0	0.9928
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Lus10029859 [exp]	2.2	0.9814
					Lus10032472 [exp]	2.4	0.9913
AT2G45010			PLAC8 family protein (.1.2)		Lus10042885 [exp]	3.5	0.9815
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10035782 [exp]	4.9	0.9780
AT5G27870			Plant invertase/pectin methyle...		Lus10037489 [exp]	5.3	0.9766
AT1G74920		ALDH10A8	aldehyde dehydrogenase 10A8 (....		Lus10004239 [exp]	6.7	0.9625
AT4G25800			Calmodulin-binding protein (.1...		Lus10020686 [exp]	7.2	0.9197
AT5G01810		ATPK10, SnRK3.1...	SNF1-RELATED PROTEIN KINASE 3....		Lus10030545 [exp]	7.8	0.8619

Compare expression of checked genes

Lus10040287 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.