Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15910 179 / 6e-51 FDM1 factor of DNA methylation 1, XH/XS domain-containing protein (.1) AT4G00380 177 / 3e-50 FDM2 factor of DNA methylation 2, XH/XS domain-containing protein (.1) AT1G13790 149 / 1e-39 FDM4 factor of DNA methylation 4, XH/XS domain-containing protein (.1) AT3G12550 148 / 1e-39 FDM3 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2) AT3G48670 144 / 6e-38 RDM12, IDN2 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) AT1G80790 140 / 7e-37 FDM5 factor of DNA methylation 5, XH/XS domain-containing protein (.1) AT4G01780 130 / 8e-34 XH/XS domain-containing protein (.1) AT3G29375 120 / 4e-31 XH domain-containing protein (.1.2) AT5G59390 116 / 1e-28 XH/XS domain-containing protein (.1) AT4G01180 100 / 3e-23 XH/XS domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040287 [exp] 296 / 3e-98 AT1G15910 164 / 4e-45 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10037986 [exp] 172 / 3e-48 AT1G15910 645 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10009217 [exp] 171 / 8e-48 AT1G15910 639 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10026076 [exp] 160 / 7e-44 AT1G15910 608 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10000948 [exp] 147 / 7e-43 AT3G12550 193 / 2e-58 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2) Lus10002702 [exp] 155 / 3e-42 AT3G48670 669 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10000951 [exp] 155 / 4e-42 AT3G48670 670 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10036870 [exp] 142 / 9e-39 AT1G15910 160 / 7e-44 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10002703 [exp] 145 / 3e-38 AT3G48670 495 / 3e-166 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G184800 [exp] 174 / 6e-49 AT1G13790 526 / 1e-178 factor of DNA methylation 4, XH/XS domain-containing protein (.1) Potri.010G202700 [exp] 170 / 5e-47 AT3G48670 716 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Potri.003G181000 [exp] 160 / 5e-44 AT1G15910 626 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03469 [flax] [poplar] XH XH domain
Representative CDS sequence Show only first row Show all	>Lus10040288 pacid=23173834 polypeptide=Lus10040288 locus=Lus10040288.g ID=Lus10040288.BGIv1.0 annot-version=v1.0 ATGGAGAAAGACAACAACCAAGAACAATACCTACTGAATCAAGCAAACCAAGTCATTAGTAATCTCGTTCTGCAGCTTCAGACCAAAGCTAATGAGTTGG CAGAACTGCGACTTAACTATGCTGACACGACAGGATTCTCGAATAGAATGATTGCTCAACTTGTTGACAAATTACAGTCTAGAGACGCCACTATTCTCGA ATTGGAGCACAAGTACGAGGACGCTTCTGCACTTTCAATATATTTGGAATCTGAGAAAGATCAAATGCAGGATTACTATCTCAGAGAAATTAAGTTCTTG AAGGCCACAATCGTTCTACTGGAACGTAACATGAAATGGCAGGAGCAATTGAACCAACAGATGGAAGAGAAGGAGGAACAGCTTGCCAAAGAAGAGCAGG CAGCTCGAAGTTTATTGGACCAAATGGAGAAGTTAAGAGAAAGCATGCAAGCTGAAAAACTGGAGTATACTAGGAATTCACGTGAGAAGTTTGAAGCACT GAAGGAAAAGTTGGAGGAAAAGGAGGAGGCACTGCAGTTTGCGGAAGACCTTAACCGTGTTCTCATGGTGAAGGAGTTAGCAGCCAACCAAGAACTCCAG GATGCTCGCAAAAAATCAATCAGTGGGTTGCAAGAAGTGATGCGGAGCCATCACCACTGGTCAACCATCGGGATCAAGAGAATGGGGGAAATCAAAGGCC AAGTCTTCCGCGAGGCTTGCCTTGGTAAGTTCACTAGCGAGGAGGTAGACAATGCATCTGCTAAAATGTGCTCCTTATGGGAGCAACATTTAAAAGATCC ACACTGGCATCCTTTCAAGCACACCGGAGACCAACCATCACAGGTGGTGATAGATGAAGATGATGAGAAGTTGAAGGAGTTGAGGAATGGATATGGAGAA GTGGTGTATAATGCTGTGACACAGGCGCTAGTGGAGTTGAACGAGTACAATTCGAGCGGGAGGTATCCGGTTCATGAAGTGTGGAACTTCAAGGAAGAAA GGAAAGCCAGCATGAAAGAAGTTGTTCATTATCTCATCAATCAGTTGAAGACGCGGAAGCGTAAAAGAACGTAG
AA sequence Show only first row Show all	>Lus10040288 pacid=23173834 polypeptide=Lus10040288 locus=Lus10040288.g ID=Lus10040288.BGIv1.0 annot-version=v1.0 MEKDNNQEQYLLNQANQVISNLVLQLQTKANELAELRLNYADTTGFSNRMIAQLVDKLQSRDATILELEHKYEDASALSIYLESEKDQMQDYYLREIKFL KATIVLLERNMKWQEQLNQQMEEKEEQLAKEEQAARSLLDQMEKLRESMQAEKLEYTRNSREKFEALKEKLEEKEEALQFAEDLNRVLMVKELAANQELQ DARKKSISGLQEVMRSHHHWSTIGIKRMGEIKGQVFREACLGKFTSEEVDNASAKMCSLWEQHLKDPHWHPFKHTGDQPSQVVIDEDDEKLKELRNGYGE VVYNAVTQALVELNEYNSSGRYPVHEVWNFKEERKASMKEVVHYLINQLKTRKRKRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10040288 [exp]	0	1
AT5G64180			unknown protein		Lus10013157 [exp]	15.5	0.7892
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10024423 [exp]	17.3	0.8179
AT4G39300			unknown protein		Lus10026340 [exp]	25.7	0.7780
AT2G28430			unknown protein		Lus10022580 [exp]	38.2	0.7581
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Lus10024082 [exp]	42.5	0.7880
AT1G04290			Thioesterase superfamily prote...		Lus10019228 [exp]	43.8	0.7862
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Lus10008115 [exp]	44.8	0.7278
AT4G14965		ATMAPR4	membrane-associated progestero...		Lus10042022 [exp]	51.4	0.7812
AT4G31720		STG1, TAFII15, ...	TBP-ASSOCIATED FACTOR 10, SALT...		Lus10005077 [exp]	52.0	0.7807
AT5G47890			NADH-ubiquinone oxidoreductase...		Lus10030922 [exp]	53.7	0.7862

Compare expression of checked genes

Lus10040288 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.