Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55480 1227 / 0 AP-3beta, PAT2 beta-subunit of adaptor protein complex 3, protein affected trafficking 2 (.1.2) AT4G23460 118 / 8e-27 Adaptin family protein (.1) AT4G11380 117 / 1e-26 Adaptin family protein (.1.2) AT5G11490 75 / 2e-13 adaptin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023408 [exp] 1991 / 0 AT3G55480 1320 / 0.0 beta-subunit of adaptor protein complex 3, protein affected trafficking 2 (.1.2) Lus10017508 [exp] 118 / 1e-26 AT4G23460 1565 / 0.0 Adaptin family protein (.1) Lus10032286 [exp] 117 / 2e-26 AT4G23460 1567 / 0.0 Adaptin family protein (.1) Lus10024654 [exp] 117 / 2e-26 AT4G23460 1560 / 0.0 Adaptin family protein (.1) Lus10028775 [exp] 117 / 2e-26 AT4G23460 1556 / 0.0 Adaptin family protein (.1) Lus10022125 [exp] 89 / 1e-17 AT5G11490 1337 / 0.0 adaptin family protein (.1.2) Lus10011675 [exp] 89 / 2e-17 AT5G11490 897 / 0.0 adaptin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G202800 [exp] 1412 / 0 AT3G55480 1246 / 0.0 beta-subunit of adaptor protein complex 3, protein affected trafficking 2 (.1.2) Potri.003G130400 [exp] 119 / 4e-27 AT4G23460 1471 / 0.0 Adaptin family protein (.1) Potri.001G101400 [exp] 117 / 2e-26 AT4G23460 1486 / 0.0 Adaptin family protein (.1) Potri.006G243100 [exp] 86 / 8e-17 AT5G11490 1355 / 0.0 adaptin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01602 [flax] [poplar] Adaptin_N Adaptin N terminal region
Representative CDS sequence Show only first row Show all	>Lus10040289 pacid=23173961 polypeptide=Lus10040289 locus=Lus10040289.g ID=Lus10040289.BGIv1.0 annot-version=v1.0 ATGTTCCCGCAATTCGGAGCGACGGGTGATACGCTGAGCAAAGCTTCGACGATCATGTTCCGGATCGGGACGGACGCTCACCTGTACGATGATCCGGAGG ACGTTAACATTGGCCCCTTGCTAGACAGCAAGTTCGATTCAGAGAAATGCGAAGCTCTCAAGAGACTTCTGGCTCTCATCGCCCAGGGTTTCGACGTTTC CAATTTCTTCCCTCAGGTGGTGAAAAACGTGGCATCTCATTCATTGGAAGTGAAGAAGCTGGTTTACTTGTATCTGCTTCATTATGCTCAAAAGCGTCCC AATGAAGCATTGCTGTCGATCAATTCATTCCAAAGGGACTTGGGGGATACAAATCCGTTAGTAAGAGCATGGGCACTCCGTACGATGGCTGGAATCCGTT TGCATGCCATTGCTCCTCTTGTTTTGGTAGCTGTTGGCAAGTGTGCTAGAGATCCCTCTGTTTACGTTAGGAAATGTGCTGCCAATGCTCTGTCAAAGTT GCATGATTTGCGTCTTGAAGAACACTCATCTACAATTGAAGAGATTGTTGGAACGTTGCTAACTGACCATTCACCTGCGGTAGTGGGCGCTGCCGCTGCT GCGTTTTCTTCTGTTTGCCCAAATAATCATTATTTGGTTGGAAAGAATTACAAAAGGCTGTGTACTATTCTTCCTGATGTTGAGGAGTGGGGTCAAATAG TCTTAATAGGAATTCTTTTGCGCTATGCAATAGCTAGGCATGGGTTGGTGAAGGAGTCCATAATGTTCCAGCTTCAAAATAAAGAACAATCGTCATTTCA AAATGATGATTCAGCTGTGGACTCCACATTCCAAGAAAAGAGTAGTGACATCAGTAAGGAATATGACTCTGAGTTGGCTAGTATGATTTCCAGGTGTTAC ATTGAAGGACCTGATGATTATTTATCCCGTTCAAGTTACTCCAACAGGGTGTTCTTGGCGTTTAGTAGCGCAAATTTTACATCTAGCAAGAATGTGGATG TGGAGATCCTACTTCAATGTACATCACCATTGTTTTGGAGCAACAATAGTGCAGTGGTGCTGGCAGCAGCTGGTGTACATTGGATTATGGCACCGCGTGA CGACATCCAAAGAATTGTTAAACCACTACTATTTTTGTTAAGATCATCAAGCAGTGCAAATTATGTGGTCCTTTGCAATATTCAAGTGTTTGCAAAAGCA ATGCCTGCCTTATTTGCTCCACACTTTGAGAACTTTTTCGTACTATCTACAGATTCTTATCAGATGAAAGCTTTGAAGCTTGAGATCCTTTCTATAATTG CTACAGATTCTTCTATGTCATCTATCCTCAAGGAATTTCAGGACTACATCAGGGATCCAGACAGGAGATTTGCAGCTGATACAGTAGCTGCAATTGGCTT ATGTGCTCTGCAACTTCCTGAAATGGCTAGTAAATGCTTGGAAGGGCTGTTAGCGTTGACTAGGCATGATCTTTTCACCAGTGACATCAAAACTTCCGAC GAAGAAGCAGGTGTTTTAGTTCAAGCAATAATGTCAATTAAAATTATTATAAAGCAGGATCCTCCAAGTCATGATAAGGTTATTGTTCAGTTAATTCGTA ACCTCGATTCTATTAAGGTAGCTGAAGCTCGTGCAATAATTATTTGGATGGTGGGAGAGTATAGCCTTCTCGGGGATTTAATTCCCAAAATGCTAATTAT TGTACTCAAGTATCTTGCTTGGAGTTTTACTTCAGAAAGCTCGGAAACAAAGCTTCAGACTCTAAACACGGTTGCTAAGGTACTATCAAATTCAAAAGAG GGAGATCTAGAGACATTATCAAAATTAGGTCGCTATGTGCTTGAACTGGCTGAAAGTGATATGAATTATGTTGTCCGTGGAAGAGGCCGTTTCTTCAGAA AACTTCTGTCAAGCCATTTTGGTTCCGAGAAATTGGAGGATGACGTGAGCACTTCCTCTGGAAACGAGGGTATGTTGAATGTACTTGCTGAACACATGTT CCGGGAACAAACAACTCAACTTTCACCTGTACCGATCAGCTTTCGAGTCTATCTTCCTGGTTCCCTGTCACAGATAGTCCTTCATGCTGCCCCGGGCTAT GAACCATTGCCAAAGCCTTGTACTATTCTTCCCGAGGAATTCGATCAGCTATCAGATGCCAATAGTGGGGCTAATATGTTGGACCCAGATGCTTCTGCTT CATTATCTGAATCTTTTGACGAGGAAAGTAGTTCTTCCAATGGTTCTGAGCATTCTAATTCTTCTAGTGGCAATGCTGACACAGGTGATACTGGTTCATC AAGTGAGGATGAAAACATCGAAAATCCTCTGATACAAATCTCTGATGAAAACCAGACTGGCCTAATGCCAGCTACTTCTACCGATCTGGGGGAACTCATG TCAAACAGAAATTTAGATACTTGGTTGGATGACCAGCCCGGTTTACCAAATTCAAGTACATCAGAAGGAACCAAGGTCTCTCGATCAGTAAGAATCTCTA TCAAGGACATTGGAAGACGAGTAACACCAAAGACCTATGAACTCTTGGATCCAACAAATGGAAATGGCTTGAAGGTGGTCTATAAATTTTCATCTGATAT TTCAAGTGTTTCACCTTATCTTGTAACCATACAAGCCTCTTTTGAGAACTGTTCCAGCGAGACAATCACGAACATAGCATTGAAGCACGAGGAGCCCACA AAATCCTCGGATGACAGTGAGAGCTCTTTGCCATCTGAGGATAATGTACCTGTACTGGTTCCTATGGAAGAGATCATTTCTCTGGAATCCGGTGAAGCAA CTACGGCGACCATTCATGTTCACTTCCATCACCACCTATTGCCCTTGAAGTTGGTATTGCATTTCAATGGCAAGAACCATCCAGTTAAGTTGCGTCCTGA CATTGGATATTTTGTGAAACCGCTTCCGATGGAAGCTGCGGCATTCAGAGACAAGGAATCTCATCTTCGGGGAATGTTTGAGTGCACAAGGAGTTGTATC TTCAGTGGCCATGTTGAAAATCTGAACAAGGACAAGGGAAATACATTCGAAGAAGACAAGTTTCTCGTGGTCTGCGAGAGCCTAGCATCGACGATGCTAA GCAACGCCAATCTCTTCCTTGTATCGGTCGACATGCCAATTGCTGCCAAGCACGACGATGCCTCCGGATTATCCCTGCGGTTCAGCAGCGAAATTCTTAG CAACTCAATGCCCTGCTTAACCACCATTACTGCAGAAGGTATATGCTCCGAGCCGTTAAATGTGGTCGTGAAAGTCAACTGTGAAGAAACCGTATTCGGA TTGAACTTGCTGAATAGGATTGTCAATTTTCTTAGTTGA
AA sequence Show only first row Show all	>Lus10040289 pacid=23173961 polypeptide=Lus10040289 locus=Lus10040289.g ID=Lus10040289.BGIv1.0 annot-version=v1.0 MFPQFGATGDTLSKASTIMFRIGTDAHLYDDPEDVNIGPLLDSKFDSEKCEALKRLLALIAQGFDVSNFFPQVVKNVASHSLEVKKLVYLYLLHYAQKRP NEALLSINSFQRDLGDTNPLVRAWALRTMAGIRLHAIAPLVLVAVGKCARDPSVYVRKCAANALSKLHDLRLEEHSSTIEEIVGTLLTDHSPAVVGAAAA AFSSVCPNNHYLVGKNYKRLCTILPDVEEWGQIVLIGILLRYAIARHGLVKESIMFQLQNKEQSSFQNDDSAVDSTFQEKSSDISKEYDSELASMISRCY IEGPDDYLSRSSYSNRVFLAFSSANFTSSKNVDVEILLQCTSPLFWSNNSAVVLAAAGVHWIMAPRDDIQRIVKPLLFLLRSSSSANYVVLCNIQVFAKA MPALFAPHFENFFVLSTDSYQMKALKLEILSIIATDSSMSSILKEFQDYIRDPDRRFAADTVAAIGLCALQLPEMASKCLEGLLALTRHDLFTSDIKTSD EEAGVLVQAIMSIKIIIKQDPPSHDKVIVQLIRNLDSIKVAEARAIIIWMVGEYSLLGDLIPKMLIIVLKYLAWSFTSESSETKLQTLNTVAKVLSNSKE GDLETLSKLGRYVLELAESDMNYVVRGRGRFFRKLLSSHFGSEKLEDDVSTSSGNEGMLNVLAEHMFREQTTQLSPVPISFRVYLPGSLSQIVLHAAPGY EPLPKPCTILPEEFDQLSDANSGANMLDPDASASLSESFDEESSSSNGSEHSNSSSGNADTGDTGSSSEDENIENPLIQISDENQTGLMPATSTDLGELM SNRNLDTWLDDQPGLPNSSTSEGTKVSRSVRISIKDIGRRVTPKTYELLDPTNGNGLKVVYKFSSDISSVSPYLVTIQASFENCSSETITNIALKHEEPT KSSDDSESSLPSEDNVPVLVPMEEIISLESGEATTATIHVHFHHHLLPLKLVLHFNGKNHPVKLRPDIGYFVKPLPMEAAAFRDKESHLRGMFECTRSCI FSGHVENLNKDKGNTFEEDKFLVVCESLASTMLSNANLFLVSVDMPIAAKHDDASGLSLRFSSEILSNSMPCLTTITAEGICSEPLNVVVKVNCEETVFG LNLLNRIVNFLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55480		AP-3beta, PAT2	beta-subunit of adaptor protei...		Lus10040289 [exp]	0	1
AT3G55480		AP-3beta, PAT2	beta-subunit of adaptor protei...		Lus10023408 [exp]	2.6	0.9066
AT2G46560			transducin family protein / WD...		Lus10030236 [exp]	14.4	0.8731
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10025263 [exp]	19.0	0.8673
AT3G07160		CALS9, ATGSL10	glucan synthase-like 10 (.1)		Lus10042959 [exp]	19.1	0.8527
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Lus10037346 [exp]	25.3	0.8221
AT2G42700			unknown protein		Lus10033604 [exp]	26.5	0.8391
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Lus10018744 [exp]	26.8	0.8285
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Lus10024828 [exp]	29.3	0.8529
AT5G47940			unknown protein		Lus10016408 [exp]	30.6	0.7656
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10022850 [exp]	31.0	0.8452

Compare expression of checked genes

Lus10040289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.