Plant FIBer expression Database

Lus10040290 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023409
[exp]
291 / 6e-101 AT3G12540 49 / 8e-07 Protein of unknown function, DUF547 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G202900
[exp]
140 / 9e-39 AT2G39690 493 / 9e-171 Protein of unknown function, DUF547 (.1.2)
PFAM info
Representative CDS sequence
>Lus10040290 pacid=23173810 polypeptide=Lus10040290 locus=Lus10040290.g ID=Lus10040290.BGIv1.0 annot-version=v1.0
ATGAAGTTTGAAGATTACTTGGCGGAGCAAGCCGACGAGAAACATCATCAGCAGAGGAGGAGAAACATCCTGGAAGAAGAGGTCGAGAACCTCCACGCAG
AATTGGACGAGCAGCAAGCGATTGGTAAAGTTTTGCAGTCCGCGCTTCACGGTCCTGTGCTACCGCCTCATCCCTGCATTGCTTCGTTGCTTCCGCCTCA
AGTACAGGGGCTTATTGCAGAGATGGCGATCGTGGAGGAGGAGATCGTGTGGTTAGAGAGGAGAGTCAACAACCTGAAACTCGGACTTTACTACGAACGG
AAGCTGACCAAGAAACAACAGAGACGGCAAAAATCGAAGCAGCAGAGTCGATTGCCGGTGTGTGAAGAAGTTGGAGCGAGTCGGTCTGTGCTCGTTGGAG
ATCTCTACCAGGTGTCGAGGTCGCAGCGCCATGGCGGTTTTAGGAAGGAGAAGTTCAAGTTCAGAAGAGCTTCTGCTGGTTCTGCTGAAGAAGTTTTGTC
GTCCGTTCTTCCTACTACTGGTCCTTCTCCGAGTAAGCCAAAGAAGCCACACAGAGCAAGAGCGCCAGTAATGCAGAAAGAGTCGGTCCCTTATCTTGTG
CACAGAGATATCATGTTACAAGAAACTCGAAAAGGGTCGAATAAGATCTCATTGCTCTGA
AA sequence
>Lus10040290 pacid=23173810 polypeptide=Lus10040290 locus=Lus10040290.g ID=Lus10040290.BGIv1.0 annot-version=v1.0
MKFEDYLAEQADEKHHQQRRRNILEEEVENLHAELDEQQAIGKVLQSALHGPVLPPHPCIASLLPPQVQGLIAEMAIVEEEIVWLERRVNNLKLGLYYER
KLTKKQQRRQKSKQQSRLPVCEEVGASRSVLVGDLYQVSRSQRHGGFRKEKFKFRRASAGSAEEVLSSVLPTTGPSPSKPKKPHRARAPVMQKESVPYLV
HRDIMLQETRKGSNKISLL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G12540 Protein of unknown function, D... Lus10040290
[exp]
0 1
AT3G26040 HXXXD-type acyl-transferase fa... Lus10001107
[exp]
12.6 0.8148
AT1G64060 RBOHAP108, ATRB... ARABIDOPSIS THALIANA RESPIRATO... Lus10017850
[exp]
23.5 0.8165
AT2G28605 Photosystem II reaction center... Lus10038658
[exp]
27.5 0.8003
AT4G08850 Leucine-rich repeat receptor-l... Lus10031738
[exp]
28.0 0.7346
AT1G07630 PLL5 pol-like 5 (.1) Lus10025348
[exp]
30.4 0.8135
AT3G26300 CYP71B34 "cytochrome P450, family 71, s... Lus10031674
[exp]
38.0 0.7827
AT5G25360 unknown protein Lus10030101
[exp]
56.9 0.7724
AT1G07630 PLL5 pol-like 5 (.1) Lus10024397
[exp]
60.3 0.8053
AT3G06240 F-box family protein (.1) Lus10018106
[exp]
80.9 0.7884
AT5G18900 2-oxoglutarate (2OG) and Fe(II... Lus10016271
[exp]
84.3 0.7668

Lus10040290 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.