Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55470 173 / 3e-56 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G63220 91 / 1e-23 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT4G00467 82 / 5e-20 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G34150 60 / 3e-11 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G05500 58 / 2e-10 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G07940 56 / 1e-09 Calcium-dependent ARF-type GTPase activating protein family (.1) AT1G73580 53 / 4e-09 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G21160 51 / 6e-08 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT4G05330 50 / 8e-08 AGD13 ARF-GAP domain 13 (.1) AT1G20080 50 / 2e-07 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023410 [exp] 238 / 6e-82 AT3G55470 149 / 5e-47 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10029565 [exp] 110 / 2e-31 AT1G63220 221 / 1e-75 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10002235 [exp] 110 / 2e-31 AT1G63220 216 / 2e-73 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10014780 [exp] 76 / 4e-17 AT4G00467 168 / 1e-52 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10027875 [exp] 64 / 9e-13 AT4G34150 246 / 3e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10006193 [exp] 64 / 3e-12 AT5G11100 862 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10008055 [exp] 62 / 1e-11 AT1G05500 775 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10038117 [exp] 62 / 2e-11 AT1G05500 888 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10041034 [exp] 61 / 2e-11 AT5G11100 710 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G203000 [exp] 191 / 3e-63 AT3G55470 167 / 6e-54 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.010G203100 [exp] 179 / 2e-58 AT3G55470 163 / 3e-52 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.002G155600 [exp] 104 / 3e-29 AT1G63220 202 / 1e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.014G084100 [exp] 83 / 3e-20 AT4G00467 194 / 4e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.009G097900 [exp] 61 / 1e-11 AT4G34150 213 / 5e-69 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G124000 [exp] 59 / 8e-11 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.016G005300 [exp] 57 / 8e-11 AT5G47710 264 / 1e-91 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.001G372000 [exp] 59 / 1e-10 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.006G004600 [exp] 57 / 1e-10 AT5G47710 270 / 3e-94 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.001G301900 [exp] 57 / 2e-10 AT4G34150 204 / 8e-66 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10040291 pacid=23173908 polypeptide=Lus10040291 locus=Lus10040291.g ID=Lus10040291.BGIv1.0 annot-version=v1.0 ATGGCGATTGGGATATTGGAGGTTAATGTGGTGAGCGCCAAGGGCCTCAGCAACACCGATTTCCTTGGTGGAATCGATCCATACGTGGTAGTTGAGTACA GGAATCAAGAGCGGAAGACCAGCGTTGCCAGAGAGGCAGGTGGAAGTCCAGCGTGGAACGAGAAGTTGTCATTCAGGGCGGAATATCCAGCACCTCAAGG TGGCGATTACAAGCTCACCCTTAAGATCATGGACCACGACACTTTCACTGCCGATGACTTCGTTGGCATGGCTACGATTCAGCAAGTGAAAGAAGTGTTG GAAACAGGGGTGGAGAAGGGGAGCTACGAGCTCCGACCTTGCAAGTACAGTGTGGTTACTGCTGACAACTCTTACCGCGGTGAGATCAAAGTTGGTCTTA CTTTTACCCTCAAGGCAGGGGACGGTGGCGATGGACAGCAGTTCGGAGGCTGGAGGGAAAGCAATTTTTAA
AA sequence Show only first row Show all	>Lus10040291 pacid=23173908 polypeptide=Lus10040291 locus=Lus10040291.g ID=Lus10040291.BGIv1.0 annot-version=v1.0 MAIGILEVNVVSAKGLSNTDFLGGIDPYVVVEYRNQERKTSVAREAGGSPAWNEKLSFRAEYPAPQGGDYKLTLKIMDHDTFTADDFVGMATIQQVKEVL ETGVEKGSYELRPCKYSVVTADNSYRGEIKVGLTFTLKAGDGGDGQQFGGWRESNF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55470			Calcium-dependent lipid-bindin...		Lus10040291 [exp]	0	1
AT3G29635			HXXXD-type acyl-transferase fa...		Lus10005362 [exp]	4.2	0.9509
AT1G66880			Protein kinase superfamily pro...		Lus10009151 [exp]	5.7	0.9339
AT5G17000			Zinc-binding dehydrogenase fam...		Lus10004379 [exp]	5.8	0.9462
AT1G17170		ATGSTU24	Arabidopsis thaliana Glutathio...		Lus10030362 [exp]	8.5	0.9376
AT2G30140			UDP-Glycosyltransferase superf...		Lus10042261 [exp]	9.6	0.9423
AT2G03270			DNA-binding protein, putative ...		Lus10042360 [exp]	11.8	0.8767
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10021102 [exp]	12.6	0.9403
AT3G13600			calmodulin-binding family prot...		Lus10039178 [exp]	13.3	0.9250
AT5G23160			unknown protein		Lus10010194 [exp]	14.7	0.9331
AT2G26930		CMK, CMEK, ISPE...	PIGMENT DEFECTIVE 277, 4-\(cyt...		Lus10036098 [exp]	16.0	0.9388

Compare expression of checked genes

Lus10040291 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.