Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21000 301 / 5e-104 PLATZ transcription factor family protein (.1.2) AT1G76590 289 / 2e-99 PLATZ transcription factor family protein (.1) AT1G43000 233 / 1e-77 PLATZ transcription factor family protein (.1) AT4G17900 215 / 2e-70 PLATZ transcription factor family protein (.1.2) AT1G32700 209 / 2e-68 PLATZ transcription factor family protein (.1.2) AT5G46710 180 / 1e-56 PLATZ transcription factor family protein (.1) AT2G27930 143 / 1e-42 PLATZ transcription factor family protein (.1) AT1G31040 127 / 1e-35 PLATZ transcription factor family protein (.1) AT2G12646 120 / 7e-33 PLATZ transcription factor family protein (.1) AT3G60670 115 / 3e-31 PLATZ transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023411 [exp] 437 / 6e-156 AT1G21000 313 / 7e-107 PLATZ transcription factor family protein (.1.2) Lus10000952 [exp] 352 / 9e-124 AT1G21000 347 / 5e-122 PLATZ transcription factor family protein (.1.2) Lus10002700 [exp] 350 / 1e-122 AT1G21000 345 / 1e-120 PLATZ transcription factor family protein (.1.2) Lus10027735 [exp] 210 / 2e-68 AT1G21000 218 / 9e-72 PLATZ transcription factor family protein (.1.2) Lus10035554 [exp] 203 / 1e-65 AT1G21000 221 / 4e-73 PLATZ transcription factor family protein (.1.2) Lus10020337 [exp] 197 / 9e-63 AT4G17900 282 / 3e-96 PLATZ transcription factor family protein (.1.2) Lus10030968 [exp] 195 / 2e-62 AT4G17900 299 / 1e-103 PLATZ transcription factor family protein (.1.2) Lus10040082 [exp] 194 / 7e-62 AT4G17900 306 / 2e-106 PLATZ transcription factor family protein (.1.2) Lus10004577 [exp] 187 / 2e-59 AT4G17900 287 / 6e-99 PLATZ transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G259000 [exp] 333 / 5e-117 AT1G21000 366 / 1e-129 PLATZ transcription factor family protein (.1.2) Potri.002G002200 [exp] 329 / 3e-115 AT1G21000 365 / 2e-129 PLATZ transcription factor family protein (.1.2) Potri.019G051200 [exp] 205 / 2e-66 AT4G17900 309 / 2e-107 PLATZ transcription factor family protein (.1.2) Potri.016G097100 [exp] 200 / 9e-65 AT1G32700 200 / 3e-65 PLATZ transcription factor family protein (.1.2) Potri.006G119400 [exp] 198 / 3e-64 AT2G27930 212 / 3e-70 PLATZ transcription factor family protein (.1) Potri.013G078500 [exp] 199 / 4e-64 AT4G17900 312 / 1e-108 PLATZ transcription factor family protein (.1.2) Potri.003G092800 [exp] 199 / 5e-64 AT4G17900 290 / 5e-100 PLATZ transcription factor family protein (.1.2) Potri.001G141500 [exp] 195 / 2e-62 AT4G17900 302 / 5e-105 PLATZ transcription factor family protein (.1.2) Potri.009G003200 [exp] 190 / 6e-61 AT2G27930 227 / 3e-76 PLATZ transcription factor family protein (.1) Potri.001G212400 [exp] 187 / 1e-59 AT2G27930 224 / 6e-75 PLATZ transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04640 [flax] [poplar] PLATZ PLATZ transcription factor
Representative CDS sequence Show only first row Show all	>Lus10040292 pacid=23174027 polypeptide=Lus10040292 locus=Lus10040292.g ID=Lus10040292.BGIv1.0 annot-version=v1.0 ATGGCGGCCACCGGAGGCCAGCGGGACCTGGTTCCGGCGTGGTTGAAACCAATGCTGAAAGCAAGCTACTTTGCTCCTTGTAACGTACATGGTGATTCCA GCAAGAGTACTGAATGCAATATGTTCTGCTTGGATTGCTCTGGGAATGCTCTCTGTTCTTACTGTTTGATTAATCACAAGGATCACCAGGTCGTTCAGAT TCGACGGTCATCGTACCATAACGTGGTGAGAGTGATCGAAATACAAAAGTACATAGACATATCTTGCGTCCAGACCTATGTTATCAACAGTGCCAAGATT GTGTTCCTGAACGAGAGGCCTCAGTCGAGACCTGGGAAAGGAGTTACGAGTACTTGCGCAATCTGCTGCAGGAGCCTCCCCGATTCCTTCCGGTTCTGCT CCCTCGGCTGCAAGCTAGGAGGCGTGAAACGAGGAGATGATCAATCCCTCACATTCATACTACGAGAGAAGCACAACAGAGATCGGATTTTCGGGGAAGG AGGGTCTGATTCAGATGAATCGTCCACTCCTAAGAAGATGCAAAGGACTAATCTTTTCAGCCGGATGATGGATAGGCTCTCAATTCATGCTCCGGAGGCT CATGATAGCTCTGGCGATGAGGCTGCTGCTGTCAACATTTCGCCAACTACTCCTCCGATGTTCAATCATAACAATGCCAGGAGACGCAAGGGTAAACCTC ACCGCGCCCCGTTTTGA
AA sequence Show only first row Show all	>Lus10040292 pacid=23174027 polypeptide=Lus10040292 locus=Lus10040292.g ID=Lus10040292.BGIv1.0 annot-version=v1.0 MAATGGQRDLVPAWLKPMLKASYFAPCNVHGDSSKSTECNMFCLDCSGNALCSYCLINHKDHQVVQIRRSSYHNVVRVIEIQKYIDISCVQTYVINSAKI VFLNERPQSRPGKGVTSTCAICCRSLPDSFRFCSLGCKLGGVKRGDDQSLTFILREKHNRDRIFGEGGSDSDESSTPKKMQRTNLFSRMMDRLSIHAPEA HDSSGDEAAAVNISPTTPPMFNHNNARRRKGKPHRAPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21000			PLATZ transcription factor fam...		Lus10040292 [exp]	0	1
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10031100 [exp]	13.0	0.9585
AT3G48700		ATCXE13	carboxyesterase 13 (.1)		Lus10021743 [exp]	19.2	0.9555
AT3G62650			unknown protein		Lus10017613 [exp]	20.8	0.9553
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10003148 [exp]	21.8	0.9554
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10009941 [exp]	24.3	0.8920
AT3G09520		ATEXO70H4	exocyst subunit exo70 family p...		Lus10024438 [exp]	30.8	0.9553
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10021455 [exp]	32.0	0.9531
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10002839 [exp]	32.7	0.9487
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10017624 [exp]	32.7	0.9550
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10033633 [exp]	34.3	0.9546

Compare expression of checked genes

Lus10040292 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.