Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39650 254 / 1e-83 Protein of unknown function (DUF506) (.1) AT4G14620 125 / 2e-33 Protein of unknown function (DUF506) (.1) AT2G38820 118 / 9e-31 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT3G22970 115 / 3e-30 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT3G25240 111 / 1e-28 Protein of unknown function (DUF506) (.1) AT3G07350 111 / 2e-28 Protein of unknown function (DUF506) (.1) AT3G54550 105 / 2e-26 Protein of unknown function (DUF506) (.1) AT4G32480 102 / 4e-25 Protein of unknown function (DUF506) (.1) AT2G20670 100 / 2e-24 Protein of unknown function (DUF506) (.1) AT1G77145 93 / 7e-22 Protein of unknown function (DUF506) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023412 [exp] 534 / 0 AT2G39650 273 / 2e-91 Protein of unknown function (DUF506) (.1) Lus10002695 [exp] 380 / 9e-133 AT2G39650 313 / 4e-107 Protein of unknown function (DUF506) (.1) Lus10000956 [exp] 270 / 8e-91 AT2G39650 266 / 1e-89 Protein of unknown function (DUF506) (.1) Lus10006634 [exp] 126 / 4e-33 AT3G22970 367 / 2e-125 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10039397 [exp] 126 / 9e-33 AT3G22970 362 / 2e-122 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10014718 [exp] 122 / 5e-32 AT3G22970 327 / 3e-110 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10003087 [exp] 122 / 1e-31 AT3G22970 318 / 7e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10018754 [exp] 120 / 4e-31 AT2G38820 319 / 6e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10024840 [exp] 119 / 8e-31 AT3G22970 324 / 4e-109 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G056100 [exp] 347 / 4e-120 AT2G39650 293 / 3e-99 Protein of unknown function (DUF506) (.1) Potri.010G203700 [exp] 310 / 1e-105 AT2G39650 287 / 9e-97 Protein of unknown function (DUF506) (.1) Potri.002G046300 [exp] 137 / 3e-37 AT3G22970 322 / 5e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.005G216900 [exp] 130 / 7e-35 AT3G22970 320 / 2e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.008G159800 [exp] 122 / 1e-31 AT3G22970 350 / 3e-119 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.010G080600 [exp] 115 / 2e-29 AT3G22970 371 / 3e-127 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.004G184700 [exp] 106 / 1e-26 AT3G07350 298 / 3e-101 Protein of unknown function (DUF506) (.1) Potri.005G058200 [exp] 105 / 2e-26 AT2G38820 154 / 3e-45 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.007G109700 [exp] 104 / 3e-26 AT2G38820 147 / 1e-42 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.009G144600 [exp] 103 / 2e-25 AT3G07350 271 / 1e-90 Protein of unknown function (DUF506) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04720 [flax] [poplar] PDDEXK_6 PDDEXK-like family of unknown function
Representative CDS sequence Show only first row Show all	>Lus10040293 pacid=23173863 polypeptide=Lus10040293 locus=Lus10040293.g ID=Lus10040293.BGIv1.0 annot-version=v1.0 ATGTGCGCGGCGACGGCGATGGGGGAGTGGTGGGCGAGAGGGATAGTGGGCCAGATCGGAGGAAGATTTAGCCACGAGAGCGAGCATGACTTGGCTTTTA TGGTCGGCGATTTCATCGAGAACGGCGGCAGCATCGGGGCTGAGTCATGGTGCAGTAGCGACAGCGAGTCAGGCCTCGCCGATCTCCATTCTCTTTCCGA TAAGATTTCGCTCTATAAACGCTCGGTGGCCCCTTATGAGAACGAATTGCTATCACTAGTCCATTCCCTCATCCTGTCGATCAACAAAACCGACCTTCGT CTTGTGCACTCAGGTTCTTGCAATGCGAGCTGCCTCAGGTTTCATTTGGTAAAACTCTTGAGATTTTATGGATACGATGCTGCTGTCTGCTCATCCAAGT GGCAGGGCATTGCCAAGGTCCCAGCAGATCTTTTCCTGAACTCTTGGATGTACGCTGTTGCAGGTGACTATGAATACATTGATGTGCTCAAAAGTTCAGA ACGTCTGATCATCGACCTCGATTTCCGAAGCCACTTCGAAATAGCTAGAGCCGTCGAGTCCTACGATCGAGTCCTGCAGTTACTTCCAGTCGTCTATGTG GGATCCTCGGCCATGCTGAATCGATATCTTCAAGTCATGGTCGAAGCTGGCAAGTATTCACTTGAACAGCGCTCAATGCCTCTTCCTCCGTGGAGATCTC TACAGTATCTACAAGCTAAATGGCAGTCTCCATATCGAAGACAGTACGCTCCAGATAGCAGAGTGGCCATCGCCGATGACCACAGGCAGTGTGGTGGGCA TCTCAGACGGCTGCAATCCTCTCTTCTCCATGAAGTAGAGGAAGAACGCCTCTCGAAGCCTGTAACCCAATTCCACAACAATAATTCTAGCAGGATGGTG AAGGCGGAGATGCAGCGGAGATGCTCCTTTTTGCAGCGTGTATGA
AA sequence Show only first row Show all	>Lus10040293 pacid=23173863 polypeptide=Lus10040293 locus=Lus10040293.g ID=Lus10040293.BGIv1.0 annot-version=v1.0 MCAATAMGEWWARGIVGQIGGRFSHESEHDLAFMVGDFIENGGSIGAESWCSSDSESGLADLHSLSDKISLYKRSVAPYENELLSLVHSLILSINKTDLR LVHSGSCNASCLRFHLVKLLRFYGYDAAVCSSKWQGIAKVPADLFLNSWMYAVAGDYEYIDVLKSSERLIIDLDFRSHFEIARAVESYDRVLQLLPVVYV GSSAMLNRYLQVMVEAGKYSLEQRSMPLPPWRSLQYLQAKWQSPYRRQYAPDSRVAIADDHRQCGGHLRRLQSSLLHEVEEERLSKPVTQFHNNNSSRMV KAEMQRRCSFLQRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39650			Protein of unknown function (D...		Lus10040293 [exp]	0	1
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Lus10019448 [exp]	2.2	0.8730
AT5G17680			disease resistance protein (TI...		Lus10010223 [exp]	2.4	0.8472
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10032764 [exp]	2.4	0.8227
AT2G28940			Protein kinase superfamily pro...		Lus10016536 [exp]	3.9	0.8242
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10039344 [exp]	6.0	0.8267
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10021263 [exp]	6.0	0.8518
AT2G19130			S-locus lectin protein kinase ...		Lus10024348 [exp]	6.7	0.8021
AT3G59080			Eukaryotic aspartyl protease f...		Lus10020759 [exp]	7.5	0.8190
AT4G14450		ATBET12	unknown protein		Lus10041157 [exp]	9.7	0.7978
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Lus10019446 [exp]	9.9	0.8196

Compare expression of checked genes

Lus10040293 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.