Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55430 464 / 1e-161 O-Glycosyl hydrolases family 17 protein (.1) AT5G24318 456 / 1e-158 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G39640 382 / 3e-128 glycosyl hydrolase family 17 protein (.1) AT3G46570 350 / 2e-118 Glycosyl hydrolase superfamily protein (.1) AT4G34480 353 / 2e-117 O-Glycosyl hydrolases family 17 protein (.1) AT2G16230 351 / 1e-116 O-Glycosyl hydrolases family 17 protein (.1) AT4G26830 313 / 1e-102 O-Glycosyl hydrolases family 17 protein (.1) AT2G05790 313 / 3e-102 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 307 / 3e-100 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G29360 296 / 5e-95 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016539 [exp] 471 / 9e-164 AT5G24318 484 / 1e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040808 [exp] 469 / 6e-163 AT5G24318 484 / 2e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004962 [exp] 441 / 1e-152 AT5G24318 462 / 8e-161 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10023245 [exp] 428 / 2e-147 AT5G24318 561 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10008865 [exp] 388 / 6e-132 AT5G24318 517 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10005166 [exp] 383 / 7e-129 AT5G24318 385 / 1e-129 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10023576 [exp] 344 / 1e-114 AT2G16230 644 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10012080 [exp] 342 / 2e-113 AT2G16230 564 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10040461 [exp] 339 / 1e-112 AT2G16230 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G055900 [exp] 642 / 0 AT3G55430 494 / 8e-174 O-Glycosyl hydrolases family 17 protein (.1) Potri.008G056000 [exp] 558 / 0 AT3G55430 494 / 1e-173 O-Glycosyl hydrolases family 17 protein (.1) Potri.010G203800 [exp] 528 / 0 AT3G55430 354 / 2e-118 O-Glycosyl hydrolases family 17 protein (.1) Potri.001G240000 [exp] 506 / 9e-178 AT5G24318 508 / 2e-178 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.012G017800 [exp] 457 / 4e-159 AT5G24318 583 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.004G153800 [exp] 372 / 9e-126 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.015G010100 [exp] 362 / 1e-122 AT5G24318 466 / 1e-163 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.002G261800 [exp] 364 / 2e-122 AT2G16230 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.009G115400 [exp] 351 / 2e-117 AT4G34480 645 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G158400 [exp] 318 / 2e-104 AT2G05790 751 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10040294 pacid=23173938 polypeptide=Lus10040294 locus=Lus10040294.g ID=Lus10040294.BGIv1.0 annot-version=v1.0 ATGACAGCCAACATTCTTCTTCTACTCTCCGCCGCCGCGGCGATCATCGTCATCTCCCTCTTCACCACCGCAGCCGCAATCGGGGTCAACTACGGCACAA TAGCCGACAACCTCCCTCCGCCGTCTCAGGTGGCCAACTTCATCACTACTCAGACGATCATCGACAGCGTCAAGATATTCGACGCCAATCCAGATATTCT ACGCGCCTTCGCCAACACTAATGTGAAAGTAACAGTCACCGTGGGAAACGGAGACATCCCAGCTCTCACCGACGCGCAGGCCGCGCGTCAGTGGGTGGCG GCGAATATCAAGCCGTATTATCCGGCCACCAAGATTCACCGGATCTCCGTCGGAAACGAGATCCTCGCGACGGGGAATAAGCTCTGGATTTCTCGGCTCG TCCCCTGTATGTGGGCCCTCCACAACGCGCTTGTCCAGGCTGGAATCCGCGATATCCAGGTCTCCACTCCCCACACGCTGGGAATCATCTCGAACTCGGT TCAACCGAGTCAGGCCAGGATCCGAAGAGGATATGACAAGGTGATATTCGAGCCGATGCTCAAATTCCTCCGCGAAACCAAGTCCCCGCTCATGGTCAAC CCGTACCCTTACTTCAGCTATGCGCCGAGCATTGCGGATTACGCGCTCTTCCGGCCGAACCGAGGTGTTCATGACTCGTACACCAACATCACCTACTACA ATATGTTCGAAGCCATGATGGATGCCGTCTATTCGGCCATCAAGGCCATGGGCTATGCTGATGTCGACATTGTTGTTGCCGAGACCGGATGGCCCTCCGC TGGGGACCCAAACCAACCCGCTTGTACTGTGGATAATGCTATTTCGTTCAATGCCAACTTGATCAAGGCTGTTACTTCTGGAAGGGGAACCCCGCTTATG CCGAACAGAAAGTTCGAGACATACATATTTGCAATGTTCAACGAGAACTTGAAGCCAGGGCAGTCTAATGAGAGGAATTGGGGGCTATTCCGACCCGATT TAACCGCGGTTTACAATGTCGGAATCTTGAAGAACAACCGACCACAACCATCGCCGGCTCCAATAATAGTGGGGAAGAAGTCGTGGTGCATTCCAAAGGC GAGTGCAAGTGACCAAGCATTGCAAGGGAATATAAACTACGTGTGCAGTCAGAAGGGAATGGACTGCAAGCCGATTCAAGCTGGAGGCGCTTGTTTCGCA CCGGGTAACGTGAGGTCACACGCATCGTTCGTCATGAACTCCTTTTATAGGTACCATGGAGGGCGTCCTTTCAACTGCGATTTTGCCGGTTCCGGAGTAG TCACCTTTTCCGATCCGAGTAAGGGGTTGTGTAGATACATGTGA
AA sequence Show only first row Show all	>Lus10040294 pacid=23173938 polypeptide=Lus10040294 locus=Lus10040294.g ID=Lus10040294.BGIv1.0 annot-version=v1.0 MTANILLLLSAAAAIIVISLFTTAAAIGVNYGTIADNLPPPSQVANFITTQTIIDSVKIFDANPDILRAFANTNVKVTVTVGNGDIPALTDAQAARQWVA ANIKPYYPATKIHRISVGNEILATGNKLWISRLVPCMWALHNALVQAGIRDIQVSTPHTLGIISNSVQPSQARIRRGYDKVIFEPMLKFLRETKSPLMVN PYPYFSYAPSIADYALFRPNRGVHDSYTNITYYNMFEAMMDAVYSAIKAMGYADVDIVVAETGWPSAGDPNQPACTVDNAISFNANLIKAVTSGRGTPLM PNRKFETYIFAMFNENLKPGQSNERNWGLFRPDLTAVYNVGILKNNRPQPSPAPIIVGKKSWCIPKASASDQALQGNINYVCSQKGMDCKPIQAGGACFA PGNVRSHASFVMNSFYRYHGGRPFNCDFAGSGVVTFSDPSKGLCRYM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55430			O-Glycosyl hydrolases family 1...		Lus10040294 [exp]	0	1
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10021263 [exp]	2.4	0.8900
AT5G18150			Methyltransferase-related prot...		Lus10019138 [exp]	2.8	0.8870
AT1G29290			unknown protein		Lus10029256 [exp]	3.0	0.8900
AT1G76600			unknown protein		Lus10037249 [exp]	3.0	0.8968
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Lus10019448 [exp]	4.5	0.8862
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Lus10019446 [exp]	4.7	0.8648
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10039331 [exp]	5.5	0.8703
AT1G74950	ZIM	TIFY10B, JAZ2	JASMONATE-ZIM-DOMAIN PROTEIN 2...		Lus10013166 [exp]	5.7	0.8761
AT1G70420			Protein of unknown function (D...		Lus10029153 [exp]	6.0	0.8724
AT1G18210			Calcium-binding EF-hand family...		Lus10009059 [exp]	9.5	0.8564

Compare expression of checked genes

Lus10040294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.