Plant FIBer expression Database

Lus10040295 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G55420 204 / 5e-66 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023413
[exp]
368 / 3e-130 AT3G55420 258 / 3e-87 unknown protein
Lus10005165
[exp]
279 / 4e-95 AT3G55420 245 / 2e-82 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G055800
[exp]
262 / 5e-89 AT3G55420 254 / 4e-86 unknown protein
Potri.010G203900
[exp]
261 / 2e-88 AT3G55420 253 / 7e-86 unknown protein
PFAM info
Representative CDS sequence
>Lus10040295 pacid=23174091 polypeptide=Lus10040295 locus=Lus10040295.g ID=Lus10040295.BGIv1.0 annot-version=v1.0
ATGACCACTAAGTCAGCCAATCACAAGAAGCCAAAAAACAAAGACCACCAACCGACATCGGAAAAATCACCCTCCAGCGGCGGCGGCGGAGCACTCGATT
TATCTTTCAAGCCGAGCTCGGAAGTAAAAGGACTCCGAATCGGCGGCCAATTCGTCGGCCAATTCGTCGTCAAATCATTCACAATCCGCCGCGCCAGGCC
AATCGAGCTCCTCAAGCTCCTCTCCTACCCTCCTCCTCCACCCCCAACATCATCCACCACCGCCGACAACAAAAAACCCTCCAAATCCCCATTCCCCTCC
ACCACCGCCTTCCTCCCGACAAACTTCACGATTCTAGCCCACCACGCGTGGCACACGCTCACCCTCGGCCTGGGGACCAAGAAATCTAAAGTGGTGGTGT
TCGTGTTCGAATCCGAATCGCTGAAATCCGCCACCGCCGACAAGGCCTGGCCGGTGGAGATCCCGCTCGGGGAAGTGAACAAGAAGCTAATTCGTGGACT
GAAAGGGTGCGAGGTCGCGCGGTTCAAGTTCCGGAAAGGCTGCATCACGTTCTACGTTTACGGCGTGAGGAAGGCAGGGAATATAGGATTCGGCGGCGGC
GGCGAAGAGCTGAGAGTGATACTCCAGTCGGTTGCTTCACTGAACGATTTCCTGGACCATACCGCAATGCTCGCCATGCCTAATCAGCGCTCCATTAATT
ACTCCTCCGCTGCTTCTCAGCCTGTCGCCATGGCCCATTAA
AA sequence
>Lus10040295 pacid=23174091 polypeptide=Lus10040295 locus=Lus10040295.g ID=Lus10040295.BGIv1.0 annot-version=v1.0
MTTKSANHKKPKNKDHQPTSEKSPSSGGGGALDLSFKPSSEVKGLRIGGQFVGQFVVKSFTIRRARPIELLKLLSYPPPPPPTSSTTADNKKPSKSPFPS
TTAFLPTNFTILAHHAWHTLTLGLGTKKSKVVVFVFESESLKSATADKAWPVEIPLGEVNKKLIRGLKGCEVARFKFRKGCITFYVYGVRKAGNIGFGGG
GEELRVILQSVASLNDFLDHTAMLAMPNQRSINYSSAASQPVAMAH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G55420 unknown protein Lus10040295
[exp]
0 1
AT3G03050 RHD7, ATCSLD3, ... ROOT HAIR DEFECTIVE 7, KOJAK, ... Lus10030453
[exp]
2.0 0.8784
AT4G00880 SAUR-like auxin-responsive pro... Lus10032949
[exp]
3.0 0.8846
AT2G01820 CYCJ18 Leucine-rich repeat protein ki... Lus10031944
[exp]
5.5 0.8608
AT1G17620 Late embryogenesis abundant (L... Lus10003824
[exp]
6.0 0.8622
AT5G36220 CYP91A1, CYP81D... CYTOCHROME P450 91A1, cytochro... Lus10024820
[exp]
8.8 0.8404
AT5G23100 Protein of unknown function, D... Lus10009615
[exp]
9.2 0.8712
AT2G28680 RmlC-like cupins superfamily p... Lus10005880
[exp]
9.6 0.8092
AT5G52340 ATEXO70A2 exocyst subunit exo70 family p... Lus10021283
[exp]
12.0 0.8224
AT5G57610 Protein kinase superfamily pro... Lus10001314
[exp]
13.1 0.7918
AT2G30360 PKS5, CIPK11, S... SNF1-RELATED PROTEIN KINASE 3.... Lus10022748
[exp]
14.1 0.8384

Lus10040295 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.