Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39630 476 / 3e-170 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) AT1G17130 76 / 4e-15 Family of unknown function (DUF572) (.1), Family of unknown function (DUF572) (.2) AT2G32050 70 / 1e-13 Family of unknown function (DUF572) (.1) AT3G43250 69 / 3e-13 Family of unknown function (DUF572) (.1) AT1G20575 61 / 1e-10 DPMS1 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023414 [exp] 585 / 0 AT2G39630 504 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10001691 [exp] 517 / 0 AT2G39630 479 / 3e-171 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10005164 [exp] 420 / 1e-144 AT2G39630 387 / 2e-131 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10013706 [exp] 79 / 1e-17 AT1G17130 293 / 5e-101 Family of unknown function (DUF572) (.1), Family of unknown function (DUF572) (.2) Lus10013707 [exp] 81 / 4e-17 AT1G17130 391 / 8e-137 Family of unknown function (DUF572) (.1), Family of unknown function (DUF572) (.2) Lus10005575 [exp] 81 / 6e-17 AT1G17130 391 / 1e-136 Family of unknown function (DUF572) (.1), Family of unknown function (DUF572) (.2) Lus10013228 [exp] 61 / 3e-10 AT1G20575 450 / 1e-162 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10030748 [exp] 60 / 4e-10 AT1G20575 450 / 9e-163 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G204000 [exp] 520 / 0 AT2G39630 509 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Potri.008G055700 [exp] 514 / 0 AT2G39630 499 / 5e-179 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Potri.011G096100 [exp] 81 / 3e-17 AT1G17130 375 / 1e-130 Family of unknown function (DUF572) (.1), Family of unknown function (DUF572) (.2) Potri.001G377800 [exp] 81 / 4e-17 AT1G17130 396 / 1e-138 Family of unknown function (DUF572) (.1), Family of unknown function (DUF572) (.2) Potri.005G250900 [exp] 62 / 4e-11 AT1G20575 447 / 6e-162 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.002G010300 [exp] 62 / 5e-11 AT1G20575 452 / 1e-163 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF00535 [flax] [poplar] Glycos_transf_2 Glycosyl transferase family 2 CL0110 [flax] [poplar] PF04502 [flax] [poplar] DUF572 Family of unknown function (DUF572)
Representative CDS sequence Show only first row Show all	>Lus10040296 pacid=23173833 polypeptide=Lus10040296 locus=Lus10040296.g ID=Lus10040296.BGIv1.0 annot-version=v1.0 ATGGGAGAGCTAAAGGTATTGAACAAGTACTATCCATCGGATTTCGATCCGTCGAAAGTCCCTCGTAATCGCCGGCAAAAGTACAAGCAGACGAAACGCA CAATGATGCTTCCGATGAGAATCAGATGCACAACTTGCTCCAATTACATGCACATTGATGCTCCTGCCATATTCGAGGATCCGAATTCCTTGAAACAGGT TCCATGTCCACATCTAGTTGATCCTGCAGAAAAGTACATATCGTTGATTGTTCCAGCATTCAATGAAGAACACAGGCTTCCTGCAGCTCTCGATGAAACA ATTAATTATCTTCAACAACGTGCAGCAAAGGATGCCTCTTTTACTTATGAGATATTGATCGTTGATGATGGAAGTGCCGATGCAACAAAAAGGGTAGCAT TTGACTTTGTAAGGAAACACTCAGTGGACAAAGTAAGGGTTATCCTTCTTGGGAGAAATCACGGTAAAGGAGAAGCTATTAGAAAAGGAATGCTTCATTC ACGTGGCGAACTACTTCTAATGCTGGATGCAGATGGGGCAACCAAGGTTAATGATCTCGAAAAGCTCGAAAGTAAGATCCGTGCAGTTGCAAATACCGAA GATACCACTTTTAGGATAGGTGACATCCCAGTAGCTGCATTTGGTTCCAGAGCTCATCTCGAAGAAAGGGCTTTGGCTTCAAGGAAATGGTACCGTAATT TTCTGATGAAAGGCTTCCATCTCGTGGTTCTCTTTGCTTCCGGTCCCGGTATTCGTGATACACAGTGTGGCTTCAAGATGTTTACAAGGGCTGCAGCAAG AAAGCTCTTCACAAATATCAGGCTTAAAAGATGGTGCTTCGACGTGGAGCTGGTTTATCTGTGTAAACGGTTTGAGATTCCCATGGCGGAGATTTCAGTG AAGTGGTCGGAGATTCCGGGGTCCAAGGTGAATCTATTAAGTATCCCCAACATGCTATGGGAGCTTGCTCTGATGACTGTGGGTTATAGGACTGCTATGT GGGAAATTTCCAGTTGA
AA sequence Show only first row Show all	>Lus10040296 pacid=23173833 polypeptide=Lus10040296 locus=Lus10040296.g ID=Lus10040296.BGIv1.0 annot-version=v1.0 MGELKVLNKYYPSDFDPSKVPRNRRQKYKQTKRTMMLPMRIRCTTCSNYMHIDAPAIFEDPNSLKQVPCPHLVDPAEKYISLIVPAFNEEHRLPAALDET INYLQQRAAKDASFTYEILIVDDGSADATKRVAFDFVRKHSVDKVRVILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVNDLEKLESKIRAVANTE DTTFRIGDIPVAAFGSRAHLEERALASRKWYRNFLMKGFHLVVLFASGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFEIPMAEISV KWSEIPGSKVNLLSIPNMLWELALMTVGYRTAMWEISS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10040296 [exp]	0	1
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Lus10031432 [exp]	1.4	0.8598
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Lus10013754 [exp]	2.4	0.8404
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10017472 [exp]	6.3	0.8081
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10021279 [exp]	7.2	0.8295
AT2G45690		PEX16, SSE1, AT...	SHRUNKEN SEED 1, ARABIDOPSIS P...		Lus10041379 [exp]	8.4	0.8195
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10016956 [exp]	8.8	0.8380
AT1G18640		PSP	3-phosphoserine phosphatase (....		Lus10034686 [exp]	9.2	0.8159
AT5G11640			Thioredoxin superfamily protei...		Lus10011619 [exp]	9.8	0.7843
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10028809 [exp]	9.9	0.8020
AT4G29660		EMB2752	embryo defective 2752 (.1)		Lus10015598 [exp]	12.0	0.7618

Compare expression of checked genes

Lus10040296 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.