Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46540 191 / 1e-59 ENTH/VHS family protein (.1) AT1G08670 161 / 6e-49 ENTH/VHS family protein (.1) AT3G23350 127 / 4e-35 ENTH/VHS family protein (.1) AT3G59290 49 / 1e-06 ENTH/VHS family protein (.1) AT2G43160 49 / 2e-06 ENTH/VHS family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023415 [exp] 345 / 5e-122 AT3G46540 123 / 3e-34 ENTH/VHS family protein (.1) Lus10005164 [exp] 270 / 3e-87 AT2G39630 387 / 2e-131 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10040824 [exp] 231 / 3e-75 AT3G46540 277 / 1e-92 ENTH/VHS family protein (.1) Lus10016556 [exp] 229 / 3e-74 AT3G46540 266 / 3e-88 ENTH/VHS family protein (.1) Lus10021173 [exp] 156 / 3e-45 AT3G23350 196 / 3e-60 ENTH/VHS family protein (.1) Lus10011810 [exp] 155 / 8e-45 AT3G23350 196 / 3e-60 ENTH/VHS family protein (.1) Lus10001692 [exp] 85 / 5e-20 AT3G46540 57 / 8e-10 ENTH/VHS family protein (.1) Lus10026741 [exp] 50 / 1e-06 AT2G43160 705 / 0.0 ENTH/VHS family protein (.1.2.3.4) Lus10025527 [exp] 49 / 3e-06 AT2G43160 716 / 0.0 ENTH/VHS family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G030500 [exp] 229 / 2e-74 AT3G46540 270 / 2e-89 ENTH/VHS family protein (.1) Potri.001G239200 [exp] 220 / 5e-71 AT3G46540 263 / 8e-87 ENTH/VHS family protein (.1) Potri.008G055600 [exp] 197 / 3e-62 AT3G46540 182 / 6e-56 ENTH/VHS family protein (.1) Potri.010G204100 [exp] 129 / 2e-36 AT1G08670 113 / 1e-30 ENTH/VHS family protein (.1) Potri.002G231100 [exp] 54 / 4e-08 AT2G43160 317 / 1e-96 ENTH/VHS family protein (.1.2.3.4) Potri.014G151300 [exp] 50 / 9e-07 AT2G43160 644 / 0.0 ENTH/VHS family protein (.1.2.3.4) Potri.006G234100 [exp] 48 / 2e-06 AT5G11710 479 / 2e-164 ENTH/VHS family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [flax] [poplar] ENTH_VHS PF01417 [flax] [poplar] ENTH ENTH domain
Representative CDS sequence Show only first row Show all	>Lus10040297 pacid=23173902 polypeptide=Lus10040297 locus=Lus10040297.g ID=Lus10040297.BGIv1.0 annot-version=v1.0 ATGGCACTGGTTGACTTGAAAAAACAAGCTTCCTTCTTCTTCAAGGAGAAGATCAAAACTGCTCGCTTGGCCCTTACAGATGTCACGCCTGCACAACTAT TGACAGAAGAAGCTACGAGTGGAGACGTATGGCCCCCGGACACACGTAGCATGGGAGTCATCTCAAGGGCCGCTTTCGAAGTTGACGATTACTGGCGAAT CGTCGGACTTGTACATGATAGGTTGATGAAGTTTGATGAGGATAGTTGGCAAGTCTCTTACAAGACATTGGTTCTACTAGAACACCTTCTAACTCATGGA CCTCTGAGGATTGCTCAAGAATTCGAAAGGCAGAGGAATCTTATCAGAAAGACCGGCAATTCTCTCAGCTTCGTCGATGAGAAAGGCTTTAATTGGGGAT TGAAACTGAGAGACCTATCGAGAAGGGTGATAAGTCTACTAGAAGACGGCCCACTTCTGATGCAAGAAAGAACAAGGCTTCGAAAATTAACACGAGGAAT CCAAGGATTTGGAAGCTTCAATAACGACCAACACTTGCCGTCGTCGCCAACATCATCATCATCAGATTCGGAAGACGGTAGCCTGAGTCACTATCATTCC ACCGGCAACATAGCTCCTCGTTCCACCGGAGGCGGTGGTGATGCCTTGGGTATCAAGACACTAATGAGGTGGAACTCCAACTATGATCCGTCACGGGAAA TGTATGCACAACTTCCGGAGGATGAACCAGCAGAAGAAAACGATGTCGTTTGA
AA sequence Show only first row Show all	>Lus10040297 pacid=23173902 polypeptide=Lus10040297 locus=Lus10040297.g ID=Lus10040297.BGIv1.0 annot-version=v1.0 MALVDLKKQASFFFKEKIKTARLALTDVTPAQLLTEEATSGDVWPPDTRSMGVISRAAFEVDDYWRIVGLVHDRLMKFDEDSWQVSYKTLVLLEHLLTHG PLRIAQEFERQRNLIRKTGNSLSFVDEKGFNWGLKLRDLSRRVISLLEDGPLLMQERTRLRKLTRGIQGFGSFNNDQHLPSSPTSSSSDSEDGSLSHYHS TGNIAPRSTGGGGDALGIKTLMRWNSNYDPSREMYAQLPEDEPAEENDVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46540			ENTH/VHS family protein (.1)		Lus10040297 [exp]	0	1
AT5G65790	MYB	AtMYB68	myb domain protein 68 (.1)		Lus10028248 [exp]	1.4	0.9800
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10032745 [exp]	1.7	0.9817
AT2G40260	GARP		Homeodomain-like superfamily p...		Lus10040945 [exp]	2.2	0.9723
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10000038 [exp]	3.5	0.9778
AT3G46540			ENTH/VHS family protein (.1)		Lus10023415 [exp]	4.8	0.9578
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Lus10010580 [exp]	4.9	0.9720
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036820 [exp]	4.9	0.9752
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10036537 [exp]	6.0	0.9690
AT4G34890		ATXDH1	xanthine dehydrogenase 1 (.1)		Lus10034306 [exp]	6.9	0.9669
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Lus10038086 [exp]	6.9	0.9704

Compare expression of checked genes

Lus10040297 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.