Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39518 106 / 3e-29 Uncharacterised protein family (UPF0497) (.1) AT2G39530 104 / 1e-28 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023416 [exp] 285 / 3e-99 AT2G39530 132 / 4e-39 Uncharacterised protein family (UPF0497) (.1) Lus10031303 [exp] 55 / 2e-09 AT2G39530 87 / 2e-21 Uncharacterised protein family (UPF0497) (.1) Lus10031305 [exp] 49 / 2e-07 AT2G39530 89 / 3e-22 Uncharacterised protein family (UPF0497) (.1) Lus10031304 [exp] 49 / 2e-07 AT2G39518 89 / 3e-22 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G204700 [exp] 131 / 4e-39 AT2G39530 112 / 2e-31 Uncharacterised protein family (UPF0497) (.1) Potri.012G040100 [exp] 62 / 4e-12 AT2G39518 79 / 1e-18 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10040298 pacid=23173802 polypeptide=Lus10040298 locus=Lus10040298.g ID=Lus10040298.BGIv1.0 annot-version=v1.0 ATGGCGGCACCATTTTCATACGAATCATACAACAACTCCTCCTCCTCTGTCCCCGTCGTCTCCTCCTCCTCCTCGAGGGTCTCGCGAACCGTGGCGTTCG TGCTCAGGATACTGACCCTGATATGCCTCCTCATATCAATGGTGATATTGACCACGAGCACCGCCACCTTGCAAGTGTTCACCAACTTCTCCCCCACCAC CGGACCGACCATCGTAGGCATCAAGATACACTTCAAGGACATCTACACCTACCGGTATCTGCTGGGAGCGACGGTGGTTGGGATGGCGTACATGTTGCTT CAAATCGTCGTCACGCTGTGTTCGCTTGCTAAAGGGAGGAACGGCAGCCTTGTATTTGACTTCTACGGCGATAAGTTGGGCGCAACGAGGGACATGAAGC CATTGTTCGCCGGAGTAGGAAACGTGGACAAGTTTTTCAACAAGGGATACGCTTCGGCCAGCGTCCTCTTCCTTGGATTCGTCTGCACTGCTATACTCTC TGTTATGTCGTCGTACGCCTTGCCCAAGAGGCACTAG
AA sequence Show only first row Show all	>Lus10040298 pacid=23173802 polypeptide=Lus10040298 locus=Lus10040298.g ID=Lus10040298.BGIv1.0 annot-version=v1.0 MAAPFSYESYNNSSSSVPVVSSSSSRVSRTVAFVLRILTLICLLISMVILTTSTATLQVFTNFSPTTGPTIVGIKIHFKDIYTYRYLLGATVVGMAYMLL QIVVTLCSLAKGRNGSLVFDFYGDKLGATRDMKPLFAGVGNVDKFFNKGYASASVLFLGFVCTAILSVMSSYALPKRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39518			Uncharacterised protein family...		Lus10040298 [exp]	0	1
AT3G59480			pfkB-like carbohydrate kinase ...		Lus10013611 [exp]	1.7	0.9739
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10038913 [exp]	2.0	0.9713
AT2G39530			Uncharacterised protein family...		Lus10023416 [exp]	2.2	0.9647
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10012797 [exp]	2.6	0.9622
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10041267 [exp]	2.8	0.9622
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Lus10024123 [exp]	4.9	0.9658
AT1G35830			VQ motif-containing protein (....		Lus10006941 [exp]	7.1	0.9503
AT3G59480			pfkB-like carbohydrate kinase ...		Lus10026865 [exp]	7.3	0.9632
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Lus10025754 [exp]	7.7	0.9613
AT1G31130			unknown protein		Lus10028643 [exp]	7.7	0.9528

Compare expression of checked genes

Lus10040298 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.