Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59950 67 / 2e-13 RNA-binding (RRM/RBD/RNP motifs) family protein AT5G02530 67 / 8e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G66260 58 / 1e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G37720 55 / 1e-08 DIP2, ALY4 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023417 [exp] 228 / 3e-74 AT5G59950 130 / 3e-37 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10024413 [exp] 77 / 4e-16 AT5G59950 219 / 1e-71 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10025329 [exp] 76 / 6e-16 AT5G59950 224 / 2e-73 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10005895 [exp] 72 / 1e-14 AT5G02530 185 / 8e-58 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10004946 [exp] 69 / 2e-13 AT5G59950 209 / 3e-67 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10005445 [exp] 69 / 2e-13 AT5G59950 210 / 9e-68 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10010982 [exp] 59 / 7e-10 AT5G37720 209 / 7e-66 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) Lus10000446 [exp] 57 / 6e-09 AT5G37720 211 / 1e-66 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G208000 [exp] 84 / 1e-18 AT5G59950 138 / 8e-40 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.016G093944 [exp] 81 / 1e-17 AT5G59950 196 / 1e-62 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.001G236900 [exp] 68 / 3e-13 AT5G59950 187 / 2e-59 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.017G129900 [exp] 64 / 1e-11 AT1G66260 216 / 3e-69 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G087000 [exp] 64 / 2e-11 AT5G37720 213 / 2e-68 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) Potri.008G052601 [exp] 58 / 4e-10 AT5G02530 97 / 2e-24 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040299 pacid=23174115 polypeptide=Lus10040299 locus=Lus10040299.g ID=Lus10040299.BGIv1.0 annot-version=v1.0 ATGGCGCTTGACGAGCTTGTCCAGAAGAACAACGTCGGCGGGCGTCGAGGTGGCTTAGCGAGCAAAGGCAGAGGCAGAGGAAGAGGAAAAGGCAGCAGCG GCCGCGGATTTGTTCATTCCATCAGCGGACCAGGTCCGGACCGTCGGTTGGGGAGCCACCGCGGATCCTTCAGGTGTAGACCTTACGCAATGCCGCTGCC GCTGCAGGTGCCGAATACGGCGATGCCGGTGCTTGAGCCGATGATCGTCCATGAGTCTGACCGAGGTGAAGGCACCATGCTTTACTTGTCCAATCTGCAT TATGGGGTTACTAATCAGGACATCAAGAAGTTTGCATTACTCAGGTTACATTTAGATGCTGTAACCGTACTGTTTGGATGTTTCAATCATAATTCAGAGT TCGATGAATGCTTTGACTTGCCTATTGTTCTCAAGTCTCAGCTCTATCGTGACTTGCCCAGCATTTGGGAACCATTGACGCATTGGATGTTTGTTGCAGC TGCTCTTTTCAGATATAGGGGAGCTAAAGCGGGAACGGGCGAAGTTGTTTACGCACAACGTAGAGATGCTTTGACGGCTATGAACAAGTATAACAATGTT CAACTTGACGGGAAGCCGCTCCAAATCGAGATGATAGGGGTTAAGATGGTAGCTGTTCTTCCTCCTCCTCTGGGTTTTCCTCCTCCTCCTGCGGTTTTTC CTCCTCCTTTTAACATGATGATGATAAGGCCTAATCATCCCTTTGTGAGAGGTGAAGAGAGTCTCCGAGCAAGGCAAGCCAATCGTGGCGGTGGAATTGG CAGAGGCCAGGCTCAAGGCCAGCGAAGGAAGGTGTCTGCAGAAGAGCTTGATGCAGAGTTGGACCTGTATCGCTTTGAAGCCATGAAATTGAAATGA
AA sequence Show only first row Show all	>Lus10040299 pacid=23174115 polypeptide=Lus10040299 locus=Lus10040299.g ID=Lus10040299.BGIv1.0 annot-version=v1.0 MALDELVQKNNVGGRRGGLASKGRGRGRGKGSSGRGFVHSISGPGPDRRLGSHRGSFRCRPYAMPLPLQVPNTAMPVLEPMIVHESDRGEGTMLYLSNLH YGVTNQDIKKFALLRLHLDAVTVLFGCFNHNSEFDECFDLPIVLKSQLYRDLPSIWEPLTHWMFVAAALFRYRGAKAGTGEVVYAQRRDALTAMNKYNNV QLDGKPLQIEMIGVKMVAVLPPPLGFPPPPAVFPPPFNMMMIRPNHPFVRGEESLRARQANRGGGIGRGQAQGQRRKVSAEELDAELDLYRFEAMKLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10040299 [exp]	0	1
AT3G20020		ATPRMT6	ARABIDOPSIS THALIANA PROTEIN A...		Lus10017367 [exp]	6.7	0.8710
AT2G23530			Zinc-finger domain of monoamin...		Lus10023846 [exp]	6.8	0.8226
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Lus10009390 [exp]	10.6	0.8536
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10002326 [exp]	18.5	0.8501
AT2G01630			O-Glycosyl hydrolases family 1...		Lus10013465 [exp]	22.4	0.8508
AT2G32940		AGO6	ARGONAUTE 6, Argonaute family ...		Lus10035331 [exp]	31.5	0.8375
AT5G41970			Metal-dependent protein hydrol...		Lus10000877 [exp]	34.6	0.8361
AT2G32940		AGO6	ARGONAUTE 6, Argonaute family ...		Lus10029989 [exp]	35.1	0.8288
AT5G65360			Histone superfamily protein (....		Lus10025439 [exp]	36.1	0.8460
AT3G18600			P-loop containing nucleoside t...		Lus10027240 [exp]	38.2	0.8255

Compare expression of checked genes

Lus10040299 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.