Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02500 89 / 9e-21 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT3G12580 86 / 1e-19 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT3G09440 83 / 2e-18 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G02490 82 / 2e-18 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT1G16030 74 / 1e-15 HSP70B heat shock protein 70B (.1) AT1G56410 58 / 6e-10 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT5G42020 45 / 9e-06 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G28540 45 / 1e-05 BIP1 heat shock protein 70 (Hsp 70) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023419 [exp] 160 / 5e-49 AT3G12580 100 / 1e-23 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Lus10023418 [exp] 117 / 1e-30 AT5G02500 1033 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10009072 [exp] 85 / 3e-21 AT5G02500 194 / 1e-60 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10023423 [exp] 88 / 3e-20 AT3G12580 1000 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Lus10026100 [exp] 85 / 3e-20 AT1G16030 335 / 2e-112 heat shock protein 70B (.1) Lus10024407 [exp] 87 / 5e-20 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025354 [exp] 86 / 9e-20 AT5G02500 799 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025276 [exp] 86 / 9e-20 AT5G02500 1233 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10029455 [exp] 86 / 1e-19 AT5G02500 932 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G206600 [exp] 94 / 2e-22 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G205700 [exp] 93 / 3e-22 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054000 [exp] 92 / 1e-21 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205800 [exp] 91 / 3e-21 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054700 [exp] 89 / 1e-20 AT5G02500 920 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054600 [exp] 89 / 2e-20 AT5G02500 1149 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.003G184000 [exp] 83 / 1e-18 AT3G12580 1040 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G042600 [exp] 81 / 5e-18 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G042700 [exp] 71 / 1e-14 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054900 [exp] 54 / 8e-09 AT3G12580 947 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040300 pacid=23173820 polypeptide=Lus10040300 locus=Lus10040300.g ID=Lus10040300.BGIv1.0 annot-version=v1.0 ATGGGAGAACCGCCGTCGCTGCCAGCTGGAAATTTGGTGCAGTCGCCTTATTCCATGACAATGAACTTATGCAGCAGAAGAAGCGATCCATCAAAGACAG CGGAACTGCTCCAGCACCTTTGCAGTACCGATCCTCCATCCTGCCGGACTCTTCTGGTTGGTAAGTCTGAAGAAGAGCACAAGAAGAAAGTGGAGGCCAA GAATGCCCTGGAGAACTCCACTTACAACATGAAGAACACCGTCAAGGATGAGAAGATCAGCGGCCAGCTAGATGCCGCTGACAAGAGTAACAACCAGCTA GCGGCGATGAAGGAGCTCGTAGGCATATGTAATCCGATCGTTGCTAAGATGTACCAGGGTGGCGGCTGTCCTGGCATGCCTGCCGGTGGCATGGATGACG GCAATGTTCGTCCCTCGGGTGGCAGTGGAACTGGCCCCAAGATGGAAGTTTTCCCTGCGTTTTTCATTTCAGTCTTCGAGAAGGATTGTTTTCATGTTAT GATAGATGGCACCTTGTGCTTTGTTTTCTTCTGTATCTGTTCTGAACTTGTTTTTCCGGTTAAGTAA
AA sequence Show only first row Show all	>Lus10040300 pacid=23173820 polypeptide=Lus10040300 locus=Lus10040300.g ID=Lus10040300.BGIv1.0 annot-version=v1.0 MGEPPSLPAGNLVQSPYSMTMNLCSRRSDPSKTAELLQHLCSTDPPSCRTLLVGKSEEEHKKKVEAKNALENSTYNMKNTVKDEKISGQLDAADKSNNQL AAMKELVGICNPIVAKMYQGGGCPGMPAGGMDDGNVRPSGGSGTGPKMEVFPAFFISVFEKDCFHVMIDGTLCFVFFCICSELVFPVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10040300 [exp]	0	1
AT3G47440		TIP5;1	tonoplast intrinsic protein 5;...		Lus10031158 [exp]	3.6	0.9215
AT3G28960			Transmembrane amino acid trans...		Lus10023029 [exp]	4.9	0.9030
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Lus10039507 [exp]	5.5	0.8595
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10008606 [exp]	6.9	0.8678
AT1G76750			Protein of unknown function (D...		Lus10004548 [exp]	12.0	0.8904
AT1G11050			Protein kinase superfamily pro...		Lus10028553 [exp]	12.2	0.8951
					Lus10000890 [exp]	14.4	0.8242
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10042741 [exp]	18.5	0.8428
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10038526 [exp]	18.9	0.9078
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10032654 [exp]	25.8	0.8855

Compare expression of checked genes

Lus10040300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.