Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12570 700 / 0 FYD FYD (.1.2.3.4) AT2G37570 635 / 0 SLT1 sodium- and lithium-tolerant 1, HSP20-like chaperones superfamily protein (.1.2) AT5G02480 580 / 0 HSP20-like chaperones superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023420 [exp] 980 / 0 AT3G12570 730 / 0.0 FYD (.1.2.3.4) Lus10024406 [exp] 595 / 0 AT2G37570 786 / 0.0 sodium- and lithium-tolerant 1, HSP20-like chaperones superfamily protein (.1.2) Lus10025337 [exp] 594 / 0 AT2G37570 789 / 0.0 sodium- and lithium-tolerant 1, HSP20-like chaperones superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G206400 [exp] 765 / 0 AT3G12570 716 / 0.0 FYD (.1.2.3.4) Potri.008G054100 [exp] 763 / 0 AT3G12570 721 / 0.0 FYD (.1.2.3.4) Potri.013G024600 [exp] 44 / 7e-05 AT1G54850 216 / 2e-71 HSP20-like chaperones superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040301 pacid=23173963 polypeptide=Lus10040301 locus=Lus10040301.g ID=Lus10040301.BGIv1.0 annot-version=v1.0 ATGGGGGAAGATCTCATAACTACCTTGTCAATGGAGAATTATCACCCTTCTACGCTTTTGTCGATGGATTCAGGTTCCTTAATGCATGATGAGTTGGACC GAGAGCTTAATAGACCCTTGATTCTCTCTAGGCCACCTGACATCAATCTCCCCGTATCGTCCGAGCCTCCTTCGCCTTCTCTCCTGAACTGGAACGACTC GTGTGACATCCTAGATTTGACCCATGCTCCTCCGACTTATGAGGTTGAGACGACTGTCCATTTGCCGAAAGCTTCCAAGAAGTGTGTCAAGAGGCTTGAC AGCATTTGGGGTGCTTGGTTCTTCTTTACCTTCTACTTCAAGCCGGTTTTGAATGAGAAGTCCAAGTCCAAGATAATTAAGGATAGTAACGGTGTTTCTG GATACGAGAAATCGGATCTTAACCTTGATTCGTTCTTGGTACAACACGATATGGAAAATATGTACATGTGGGTTTTCAAGGAAAGACCTGAGAATGCTTT GGGAAAGATGCAGCTGAGGAGTTACATGAACGGGCACTCCCGTCAAGGGGAGCGACCCTTTCCATTCAGTGTTGATAAAGGTTTCCTCAGATCTCACAGG ATGCAGAGGAAGCATTATAGGGGTCTCTCTAACCCTCAGTGCCTTCATGGTATCGAAGTTGTTCACACGCCGAACCTCATGAATCTCGAAGAGGAAGACC GGAAGAGGTGGGTAGAACTCACAGGACGCGAAATAAGCTTCTCAATTCCCTCTGAAGCTAGCGACTTTGGCTCGTGGAGGACCCTTCCCAACACGGAATT TGAGCTGGAGCGCCCCCCTCTTCCATTGAAGATCAACGGCCATTTCCACCCAAAGAAACTGCTAAATGGGACCGGTTTGAATCTTTCTTCTCACTCTTCG GAACATAGCGGTGGCGAAGTGATGAACATTTCTCCGGTTTGCAATAATAAAAGGAAGAAGGATTATTCGCCTCATGCAAATGAGGATGATTCGCGTGGTG AGAGGGGGGTTGATATGAACATCCAGCCGTTGGAACCGGCATGGCTCAACGATTTCACCGGGGTGATGAAAAACGTGTACGGTCCCGTTACAGGAGCGAA AACAATATACGAAGACAAGGAAGCGTTCTTGATCATCATCAGCTTGCCCTTTGCAGATCTGGAGAGGGTGAAAGTCACTTGGAGGAACACTAACACACAT GGAATTGTGAAGATATCTTGTGTAAGTACTGCTCGCATGCCATTTATTAAACGGCACGATAGAACATTTAAGCTAACAGATCCAACACCAGAGCACTGTC CACCAGGGGAGTTCCTTAGGGAGATTGCCCTCCCGAACCGGATTCCAGAAGATGCCAAGCTCGAAGCCTACCGGGATGAGACAGGGACGATGCTGGAGAT CATCGTCCCAAAACGTCGCGTAGGACCGGAAGAACACGAAGTCCGTGTTTGTCTTCGCCCTTCTCCTTTGAGCGAGCGAGCATTCATCGACTTGAAGGAG ACATCACTTTGA
AA sequence Show only first row Show all	>Lus10040301 pacid=23173963 polypeptide=Lus10040301 locus=Lus10040301.g ID=Lus10040301.BGIv1.0 annot-version=v1.0 MGEDLITTLSMENYHPSTLLSMDSGSLMHDELDRELNRPLILSRPPDINLPVSSEPPSPSLLNWNDSCDILDLTHAPPTYEVETTVHLPKASKKCVKRLD SIWGAWFFFTFYFKPVLNEKSKSKIIKDSNGVSGYEKSDLNLDSFLVQHDMENMYMWVFKERPENALGKMQLRSYMNGHSRQGERPFPFSVDKGFLRSHR MQRKHYRGLSNPQCLHGIEVVHTPNLMNLEEEDRKRWVELTGREISFSIPSEASDFGSWRTLPNTEFELERPPLPLKINGHFHPKKLLNGTGLNLSSHSS EHSGGEVMNISPVCNNKRKKDYSPHANEDDSRGERGVDMNIQPLEPAWLNDFTGVMKNVYGPVTGAKTIYEDKEAFLIIISLPFADLERVKVTWRNTNTH GIVKISCVSTARMPFIKRHDRTFKLTDPTPEHCPPGEFLREIALPNRIPEDAKLEAYRDETGTMLEIIVPKRRVGPEEHEVRVCLRPSPLSERAFIDLKE TSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12570		FYD	FYD (.1.2.3.4)		Lus10040301 [exp]	0	1
AT3G54620	bZIP	BZO2H4, ATBZIP2...	BASIC LEUCINE ZIPPER O2 HOMOLO...		Lus10018759 [exp]	1.7	0.7087
AT3G29770		ATMES11	ARABIDOPSIS THALIANA METHYL ES...		Lus10030707 [exp]	6.9	0.6802
AT2G20360			NAD(P)-binding Rossmann-fold s...		Lus10024964 [exp]	8.0	0.6928
AT4G04920		AtSFR6, SFR6	sensitive to freezing 6 (.1.2)		Lus10011192 [exp]	9.3	0.7613
AT4G00650		FLA, FRI	FLOWERING LOCUS A, FRIGIDA-lik...		Lus10043012 [exp]	19.2	0.6704
AT3G12570		FYD	FYD (.1.2.3.4)		Lus10023420 [exp]	28.9	0.6385
AT2G20140		RPT2b	regulatory particle AAA-ATPase...		Lus10022834 [exp]	30.6	0.6816
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Lus10029637 [exp]	42.0	0.5867
AT2G05710		ACO3	aconitase 3 (.1)		Lus10039678 [exp]	68.7	0.6633
AT2G25790			Leucine-rich receptor-like pro...		Lus10011609 [exp]	70.3	0.6362

Compare expression of checked genes

Lus10040301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.