Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59350 44 / 6e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023421 [exp] 349 / 4e-122 AT5G59350 115 / 2e-30 unknown protein Lus10005456 [exp] 61 / 3e-11 AT5G59350 92 / 7e-23 unknown protein Lus10016568 [exp] 56 / 1e-08 AT5G59350 166 / 1e-49 unknown protein Lus10040839 [exp] 54 / 2e-08 AT5G59350 160 / 2e-47 unknown protein Lus10004955 [exp] 53 / 3e-08 AT5G59350 147 / 2e-44 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G054400 [exp] 162 / 2e-48 AT5G59350 91 / 8e-21 unknown protein Potri.010G206100 [exp] 160 / 2e-47 AT5G59350 111 / 1e-28 unknown protein Potri.001G238300 [exp] 69 / 3e-13 AT5G59350 146 / 1e-41 unknown protein Potri.009G029300 [exp] 67 / 1e-12 AT5G59350 161 / 1e-47 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040302 pacid=23173801 polypeptide=Lus10040302 locus=Lus10040302.g ID=Lus10040302.BGIv1.0 annot-version=v1.0 ATGAAGTCTTTGAGTAGTGTAGGACTTGGGTTGAGCATAGTATTTGGGTGCCTTTTGCTAGCTCTGGTAGCTGAGCTTTACTACCTGTTATGGTGGAAAA GAAGGTTCACTAACAGAAGAAGAGATGATTTGAGCAGTAGTCCAGGAAAGGAGTTTTTGTACATGTTCTGCCTGAAAAAGCCATCATCATCATCATCATC AATCAACCAGGAGCTGTGTTCATCAGTAAGAATCACAGATGCTCTTGTGAACCATGAGCAATGCAAGGAGTTTGTGGCTGATGCAATGGAAGCTGAGATC ATTAGGCTGAATAGCCTCACAGGTCCACCAAGGTTTCTGTTTACAATTGTTGAGGAGACTAGAGAGGATTTGGAATCTGAGTCGAGATCAAGAGGGAGAA GCTTGAGTGATTTGATGCTGACTGTTGAGAGTAGTACTCCATACTTGACTCCTCTTACTTCTCCGCCATTCTTCACACCTCCTCTCACTCCACCACCAAT GGATTCCAATAATTGGGAGACATCAACTGAGGCAGAGTTCAACAAGATAAGGTCATCCCCACCTCCAAAGTTCAAGTTTTTGCAGGATGCAGATGAGAAA CTTTACAGGAGGAATCAAGAAATGGAAAGGGTTGGCAGGAATCAAGGAATGGCTGGTCAAGAGCAGGATGAAGAAGTAAAAGATGGGAACTTTATCACCA TCACAGTTGATAGGTACATAGAGAGCTGCAGTTCATCAAAGGTACTTCCTTTGCCTTGTTCTTCAACTTCATCAATGCAGCAAAGGCAATAA
AA sequence Show only first row Show all	>Lus10040302 pacid=23173801 polypeptide=Lus10040302 locus=Lus10040302.g ID=Lus10040302.BGIv1.0 annot-version=v1.0 MKSLSSVGLGLSIVFGCLLLALVAELYYLLWWKRRFTNRRRDDLSSSPGKEFLYMFCLKKPSSSSSSINQELCSSVRITDALVNHEQCKEFVADAMEAEI IRLNSLTGPPRFLFTIVEETREDLESESRSRGRSLSDLMLTVESSTPYLTPLTSPPFFTPPLTPPPMDSNNWETSTEAEFNKIRSSPPPKFKFLQDADEK LYRRNQEMERVGRNQGMAGQEQDEEVKDGNFITITVDRYIESCSSSKVLPLPCSSTSSMQQRQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59350			unknown protein		Lus10040302 [exp]	0	1
AT4G09160			SEC14 cytosolic factor family ...		Lus10009458 [exp]	7.7	0.8448
AT1G34130		STT3B	staurosporin and temperature s...		Lus10017990 [exp]	10.5	0.8461
AT5G54440		CLUB, AtTRS130	CLUB (.1)		Lus10021681 [exp]	16.3	0.8385
AT3G08640			Protein of unknown function (D...		Lus10003242 [exp]	23.2	0.8316
AT1G67930			Golgi transport complex protei...		Lus10007330 [exp]	25.5	0.8301
AT4G32390			Nucleotide-sugar transporter f...		Lus10002023 [exp]	26.6	0.8309
AT2G28100		ATFUC1	alpha-L-fucosidase 1 (.1)		Lus10016140 [exp]	29.0	0.7899
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Lus10008929 [exp]	33.7	0.7695
AT1G61790			Oligosaccharyltransferase comp...		Lus10007647 [exp]	33.9	0.8309
AT1G67930			Golgi transport complex protei...		Lus10020754 [exp]	34.2	0.8242

Compare expression of checked genes

Lus10040302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.