Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39550 436 / 2e-152 GGB, ATGGT-IB, PGGT-I GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) AT3G12070 114 / 1e-28 AtRGTB2 RAB geranylgeranyl transferase beta subunit 2 (.1.2) AT5G12210 114 / 1e-28 AtRGTB1 RAB geranylgeranyl transferase beta subunit 1 (.1.2) AT5G40280 67 / 7e-12 ATFTB, WIG, ERA1 WIGGUM, ENHANCED RESPONSE TO ABA 1, ARABIDOPSIS THALIANA FARNESYL TRANSFERASE BETA SUBUNIT, Prenyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023422 [exp] 273 / 6e-90 AT2G39550 175 / 1e-52 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10019318 [exp] 139 / 7e-39 AT2G39550 49 / 7e-07 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10018502 [exp] 139 / 1e-37 AT5G12210 510 / 0.0 RAB geranylgeranyl transferase beta subunit 1 (.1.2) Lus10039714 [exp] 139 / 1e-37 AT3G12070 509 / 0.0 RAB geranylgeranyl transferase beta subunit 2 (.1.2) Lus10000944 [exp] 68 / 9e-14 AT2G39550 76 / 2e-17 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10014536 [exp] 73 / 1e-13 AT5G40280 422 / 1e-144 WIGGUM, ENHANCED RESPONSE TO ABA 1, ARABIDOPSIS THALIANA FARNESYL TRANSFERASE BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10032149 [exp] 67 / 7e-12 AT5G40280 465 / 1e-161 WIGGUM, ENHANCED RESPONSE TO ABA 1, ARABIDOPSIS THALIANA FARNESYL TRANSFERASE BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10017310 [exp] 0 / 1 AT2G39550 86 / 4e-23 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G054500 [exp] 513 / 0 AT2G39550 481 / 8e-171 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Potri.010G206001 [exp] 269 / 1e-88 AT2G39550 260 / 6e-86 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Potri.013G012500 [exp] 134 / 7e-36 AT5G12210 525 / 0.0 RAB geranylgeranyl transferase beta subunit 1 (.1.2) Potri.017G073200 [exp] 71 / 3e-13 AT5G40280 511 / 5e-180 WIGGUM, ENHANCED RESPONSE TO ABA 1, ARABIDOPSIS THALIANA FARNESYL TRANSFERASE BETA SUBUNIT, Prenyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00432 [flax] [poplar] Prenyltrans Prenyltransferase and squalene oxidase repeat
Representative CDS sequence Show only first row Show all	>Lus10040303 pacid=23174137 polypeptide=Lus10040303 locus=Lus10040303.g ID=Lus10040303.BGIv1.0 annot-version=v1.0 ATGGCGTCCGAACCACAGCCGGAGTTAGAGCTGTCGTCGTCCTCAGAAGAAGGAGAAGGAGGAAGTGTGTCTATTGGGAAATCGGTATCTCCTTTCGACA GGGAGCGGCATGTGACGTTCTTGCGGATGATGTACCAAATGATACCGTATCATTACCAATCACAGGAGATCAATCGCATTACTCTTGCCTACTTCGCCAT ATCCGGCCTCGACATCGTTGGGGCCCTTGATACAGTTGACAGGGATGAAGTTGCTAGCTGGGTTTTATCACTCAGAGCTCAACCTCGGGATGTTGCTGAA ATTGACAATGGAGAATTCTACGGTTTTAGTGGCTCCCGTTCTTCTCAGTTTCCTTCAGAAAATTCTGGGGGTTTCAGTGGCAATCACAGTCACTTGGCAA GCACATACTGCGCTTTAGCCATTTTGAAGATTGTTCATCACAATTTATTTAATATTGATTGGAGACCACTGTTATTGTCAATGAGAAATTTGCAACAACC CGATGGCAGCTTTCTTCCCATTCATTTTGGAGCAGAAACAGATCTTCGATTCACTTACTGTGCTGCGGCCATCTGTTACATGTTGGATGACTGGAGTGGG ATGGACAGAGATAAAGCCACAGAGTACATCTTAAAATGCAAGAGGGATGACCAAGACACTCCGGGCTCTGGCTGCCAGAAGTCAACCTGTGATGTGATAT ACTGCATGTTTGTTCATCTTAGTGATTTAGCTACTTCGTGTACTTACATGCAAGATATACTTTTCATTCAGGCATATGATGGTGGCTTTGGGATGACTCC AGGTGAAGAATCCCATGGTGAGTTGGAACTAGTTTTAGGTGGTGGAACATTTTGTGCTGTTGCATCCCTTCGATTAATGGGATTCCTAGAAGATGATCTT TTGTCAGACAGTGGAACTTCTTCCATACTGGATGTTCGGCTGCTGCTAGAATGGTGCTTACAGAGGCAAGCATTTGATGGTGGAATTCAAGGAAGATTAA ATAAGCCGAGTGACACTTGTTATGCATTCTGGGTCGGTGCAGTGTTGAAGATGCTAGGAGGCCAAAAGCTAATCAATGAGAAAGCCTTGCAAGGATTTCT ACTCACCTGCCAATCCGAGTACGGTGGCTTCTCCAAATTCCCAGATGAGCTGCCCGATCTCTATCATTCCTACTACGGATTCACTGCCTTCAGCCTCTTG GAAGAACCTGGCCTCAACTCAATGTTCGTCGAGCTCGGAATAACTAATGCCGCTGCTTTAAGAAACTGA
AA sequence Show only first row Show all	>Lus10040303 pacid=23174137 polypeptide=Lus10040303 locus=Lus10040303.g ID=Lus10040303.BGIv1.0 annot-version=v1.0 MASEPQPELELSSSSEEGEGGSVSIGKSVSPFDRERHVTFLRMMYQMIPYHYQSQEINRITLAYFAISGLDIVGALDTVDRDEVASWVLSLRAQPRDVAE IDNGEFYGFSGSRSSQFPSENSGGFSGNHSHLASTYCALAILKIVHHNLFNIDWRPLLLSMRNLQQPDGSFLPIHFGAETDLRFTYCAAAICYMLDDWSG MDRDKATEYILKCKRDDQDTPGSGCQKSTCDVIYCMFVHLSDLATSCTYMQDILFIQAYDGGFGMTPGEESHGELELVLGGGTFCAVASLRLMGFLEDDL LSDSGTSSILDVRLLLEWCLQRQAFDGGIQGRLNKPSDTCYAFWVGAVLKMLGGQKLINEKALQGFLLTCQSEYGGFSKFPDELPDLYHSYYGFTAFSLL EEPGLNSMFVELGITNAAALRN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39550		GGB, ATGGT-IB, ...	GERANYLGERANYLTRANSFERASE-I BE...		Lus10040303 [exp]	0	1
AT2G37975			Yos1-like protein (.1)		Lus10017192 [exp]	4.0	0.7545
AT2G39960			Microsomal signal peptidase 25...		Lus10014838 [exp]	4.2	0.7558
AT5G54750			Transport protein particle (TR...		Lus10006060 [exp]	19.7	0.7103
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Lus10031432 [exp]	19.7	0.7312
AT5G25760		PEX4, UBC21	ubiquitin-conjugating enzyme 2...		Lus10011695 [exp]	21.2	0.6633
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Lus10012233 [exp]	21.8	0.6921
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10013021 [exp]	24.5	0.6529
AT5G11390		WIT1	WPP domain-interacting protein...		Lus10034351 [exp]	25.9	0.5982
AT1G11760		MED32	unknown protein		Lus10033295 [exp]	33.5	0.6779
AT1G16000			unknown protein		Lus10023116 [exp]	36.4	0.6394

Compare expression of checked genes

Lus10040303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.