Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37590 133 / 3e-35 DOF AtDof2. 4, ATDOF2.4 DNA binding with one finger 2.4 (.1) AT3G55370 129 / 8e-34 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3) AT5G02460 125 / 9e-32 DOF AtDof5. 1 Dof-type zinc finger DNA-binding family protein (.1) AT2G28810 122 / 2e-31 DOF AtDof2. 2 Dof-type zinc finger DNA-binding family protein (.1.2) AT5G60200 120 / 2e-31 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT1G07640 115 / 2e-29 DOF OBP2, AtDof1. 1 Dof-type zinc finger DNA-binding family protein (.1.2.3) AT5G60850 116 / 3e-29 DOF OBP4, AtDof5. 4 OBF binding protein 4 (.1) AT3G45610 114 / 5e-29 DOF DOF6, AtDof3,2 DOF transcription factor 6, Dof-type zinc finger DNA-binding family protein (.1) AT1G51700 112 / 7e-29 DOF ADOF1, AtDof1. 7 DOF zinc finger protein 1 (.1) AT5G65590 114 / 2e-28 DOF AtDof5,7 Dof-type zinc finger DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005956 [exp] 140 / 1e-37 AT3G55370 174 / 8e-52 OBF-binding protein 3 (.1.2.3) Lus10029458 [exp] 133 / 4e-35 AT3G55370 161 / 6e-47 OBF-binding protein 3 (.1.2.3) Lus10016566 [exp] 130 / 4e-34 AT3G55370 160 / 2e-46 OBF-binding protein 3 (.1.2.3) Lus10025340 [exp] 126 / 3e-32 AT2G37590 182 / 4e-54 DNA binding with one finger 2.4 (.1) Lus10025707 [exp] 117 / 3e-29 AT5G65590 192 / 7e-59 Dof-type zinc finger DNA-binding family protein (.1) Lus10017882 [exp] 112 / 3e-28 AT5G60850 167 / 3e-50 OBF binding protein 4 (.1) Lus10034652 [exp] 112 / 3e-28 AT5G60850 162 / 4e-48 OBF binding protein 4 (.1) Lus10040836 [exp] 110 / 3e-28 AT2G37590 142 / 2e-41 DNA binding with one finger 2.4 (.1) Lus10022373 [exp] 110 / 6e-28 AT5G60200 116 / 7e-32 TARGET OF MONOPTEROS 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G205400 [exp] 140 / 6e-38 AT2G37590 137 / 7e-38 DNA binding with one finger 2.4 (.1) Potri.001G238400 [exp] 135 / 3e-36 AT3G55370 160 / 9e-47 OBF-binding protein 3 (.1.2.3) Potri.008G055100 [exp] 130 / 3e-34 AT3G55370 146 / 7e-41 OBF-binding protein 3 (.1.2.3) Potri.009G029500 [exp] 129 / 9e-34 AT5G02460 154 / 1e-43 Dof-type zinc finger DNA-binding family protein (.1) Potri.006G084200 [exp] 123 / 8e-32 AT2G37590 160 / 2e-46 DNA binding with one finger 2.4 (.1) Potri.015G048300 [exp] 121 / 4e-31 AT5G60850 152 / 1e-43 OBF binding protein 4 (.1) Potri.012G063800 [exp] 120 / 1e-30 AT5G60850 137 / 9e-38 OBF binding protein 4 (.1) Potri.005G149100 [exp] 120 / 1e-30 AT5G65590 197 / 1e-60 Dof-type zinc finger DNA-binding family protein (.1) Potri.007G038100 [exp] 120 / 1e-30 AT5G60200 122 / 5e-33 TARGET OF MONOPTEROS 6 (.1) Potri.011G055600 [exp] 120 / 2e-30 AT1G28310 140 / 1e-38 Dof-type zinc finger DNA-binding family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [flax] [poplar] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Lus10040305 pacid=23174111 polypeptide=Lus10040305 locus=Lus10040305.g ID=Lus10040305.BGIv1.0 annot-version=v1.0 ATGGTGGAGGTGCATGGTGGGGGAGGAAAAGGAGTAGATAATCATGAAAAAGAGACACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNCGAAGATTCCGCATCCGGGGGAGGCGGCGTTGAAATGCCCTAGATGCGAGTCAACCAACACGAAATTCTGCTACTTCAACAACTACAACCTCTCC CAGCCTCGACACTTCTGCAAGACCTGCCGCCGGTACTGGACCCGAGGCGGCGCCCTCCGTAACGTCCCCGTCGGCGGCGGCTGCAGGCGTAACAAAAGAA CTAAAGGAGGGATGAGATCCAAATCAGCCGGTGGTGGGACCACCACCACCACCAACAGGGTTACTACTTCACTGTTCGGTTCGAGTCAAAATAACCTAGG TCGAAATAGTAATTACGATTTGGTTCATCATCAATTACCACCAACGATGCTTCTTCCGCCTCTGATCAGCAACTTGGGAGGAGAAGATCTGAATTTCCAT CCTCCTCCTCCGTGTCGTGATGATGGTGAGTCATCATGGGGTGGAGGAGTGGGGCCCACTGGTACGAGCGGTGGGATTGTGGAGCAGTGGAGGATGCAGC AGGAACAACAACAGTTTCCTAATTTCTTTGCGAGTTTGGAACAGCAGCAGAATCCAAGCTCGGTGAAGATGGAGGGGAATAATAATAATAATTTACTGTC AAGGAATTTCTTGGGCAACTTTGAAGATCATCATCAAGATTATGGTGGACAATATTGCTGGCCGCCGGCGAGTGGGGGTAGTAATATTATGAATGCGTGG AGTAACAGTGGTGCAGATCATGTTCTTACTGGTGGGTTCACTTCTTCTGCTTCAACCAGCCATCTCTTGTAA
AA sequence Show only first row Show all	>Lus10040305 pacid=23174111 polypeptide=Lus10040305 locus=Lus10040305.g ID=Lus10040305.BGIv1.0 annot-version=v1.0 MVEVHGGGGKGVDNHEKETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIPHPGEAALKCPRCESTNTKFCYFNNYNLS QPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTKGGMRSKSAGGGTTTTTNRVTTSLFGSSQNNLGRNSNYDLVHHQLPPTMLLPPLISNLGGEDLNFH PPPPCRDDGESSWGGGVGPTGTSGGIVEQWRMQQEQQQFPNFFASLEQQQNPSSVKMEGNNNNNLLSRNFLGNFEDHHQDYGGQYCWPPASGGSNIMNAW SNSGADHVLTGGFTSSASTSHLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10040305 [exp]	0	1
					Lus10023424 [exp]	1.7	0.8604
AT3G49760	bZIP	ATBZIP5	basic leucine-zipper 5 (.1)		Lus10018662 [exp]	2.0	0.8574
AT4G27590			Heavy metal transport/detoxifi...		Lus10032924 [exp]	4.0	0.8212
AT3G11110			RING/U-box superfamily protein...		Lus10009832 [exp]	5.9	0.7429
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Lus10030857 [exp]	7.3	0.7627
					Lus10003607 [exp]	8.4	0.8106
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10016566 [exp]	9.3	0.8541
AT2G37590	DOF	AtDof2. 4, ATDO...	DNA binding with one finger 2....		Lus10040836 [exp]	11.5	0.7587
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10035783 [exp]	14.7	0.8181
AT5G44005			unknown protein		Lus10008219 [exp]	15.0	0.7450

Compare expression of checked genes

Lus10040305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.