Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13680 794 / 0 AtELP1, ELO2, ABO1 ELONGATA 2, ABA-OVERLY SENSITIVE 1, IKI3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023427 [exp] 1040 / 0 AT5G13680 781 / 0.0 ELONGATA 2, ABA-OVERLY SENSITIVE 1, IKI3 family protein (.1) Lus10023426 [exp] 931 / 0 AT5G13680 645 / 0.0 ELONGATA 2, ABA-OVERLY SENSITIVE 1, IKI3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G208400 [exp] 922 / 0 AT5G13680 1564 / 0.0 ELONGATA 2, ABA-OVERLY SENSITIVE 1, IKI3 family protein (.1) Potri.008G052400 [exp] 919 / 0 AT5G13680 1547 / 0.0 ELONGATA 2, ABA-OVERLY SENSITIVE 1, IKI3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF04762 [flax] [poplar] IKI3 IKI3 family
Representative CDS sequence Show only first row Show all	>Lus10040306 pacid=23174104 polypeptide=Lus10040306 locus=Lus10040306.g ID=Lus10040306.BGIv1.0 annot-version=v1.0 ATGAATAATCTCAAGCTTTACTCCGAGATATCTCTCAACATCGAGTTGCAGTCCGAAGACGAGAAGCTGCTATTTTCTGCGTTCGATATTGAGCGCAACC GTTTGTTCTTTGCTTCCTCTGCCAACTTCGTCTACAACACTCAGCTCTCTTCTTTCCAGGACGGAAAATCGTGGAAGGAGATCTTATTGACTGCAGAAGT TCATCTACTTGATTTGGAGAATGGAGATGTTATTACTTCGTTTGATTACCTCATGGAGGAAGAGGCGTTGGTTCTGGGGACTTCCAATGGACTTCTGTTG CTGCATATGGTGGATGATAATGCTACCGAAGTTGTTGGTCAGGTGGAGGGTGGTGTCAAGTGCGTCTCCCCAAGTCCAGATGGAGACTTGCTCTGTGTTG TCACTGGTTCCGGGCAGTTGCTGGTGATGACCCATGATTGGGATGTGTTGTATGAAACTTCTATTGAGGATCATCCACCTGATGGTGTTGACGTAAGTGC GCCCTCTTCCTCCATTATTTCTAAGAGTTCTGTATCTTGGAGAGGCGATGGGAAGTATTTTGCAACCTTAAGTGAGGTGAATTGCACTTCTTTGTCCTCC TTAGGCAAGAAGCTTAAGGTTTGGGCAAGGGACTCAGGCTCGTTGCATTCCATGTCAGATCCTAAGTCTTTCATGGGAGCAGTTATGGAATGGATGCCCA GCGGAGCGAAAATTGCAGCAGTATATGATAGAAAGACAAAGGATGAGTGTCCTGCAGTTGTTTTCTACGAGAGGAATGGGTTGTACAGAAGCTCTTATAG TATTAATGGACCTAAGGATGTGACAATAGAAGTTCTCAAATGGAACTGTGCTTCTGACCTTCTTGCTTCTGTTGTTAGATATGATAATCACGATGCTATT AAGATATGGCACTTCAGTAACAACCACTGGTACTTAAAACATGAAGTTCGATTCCCAAGGCAAGATGGTGTTAGCTTAATGTGGGATCCTATAAAACCAC TGCAGTTGATCTTTTGGACTCTTGGAGGCCAGGTTACAGTTTGCAATTTCACCTGGGTTACTTCCATTACGGAAAGCTCAACAGCTCTGGTAATTGACGA TTCAAAGATACTTGTGACTCCTCTTTCTTTATCCCTGATGCCACCTCCACTCCATTTATTTCACCTGAAATTTCCAAGTGCCGTGCGAGATGTTGCTTTG CACTGCAGGGGCACTAAGAATCGTGTTGCTGCCTTCCTGTCAGATGGCAGTTTGTGTGTTGCAGAGCTTCCAGAATCAGATTCCTGGGAGGAACTTGAGG GCAAAGAGCTTTGCGTTGAATCTTCTATCCCTGATATTGCATTTGGATCTCTTTCTCATCTTACATGGTTGGATTCACATTCACTTCTTGTTGTTTCTCA CTACGGTTCCAGTCATAATGTGTGTTTTTCCCATGGTATACCATGCAAGGAAAAATTGAGGGGTTTCTATCTGCAGGAGATTGAATTGATGTGTTCTGAA GATCATGTGCCAGGTTTGGTCACAAACTCAGGCTGGCATGGAAAGATTTCACATAAAAACTCTTTGGAAGGACTGGATTTCCTATTTATCGTAGGTATTA GTGACATATTACATGGAGAAATAGAATCAAAATATCAGAACTTCTTCCACATGGGCAGCAGAAAAAAAAGAGAAGAAGAAAATGCCAACTTCATTAATAT ATGGGAAAGAGGTGCCAAAGTTGTTGGTGTGTTACATGGTGATGAAGCTGCTGTCATCATTCAAACAACTCGAGGAAATCTTGAATGCATTTATCCCAGA AAACTGGTCCTATCATCTATTATCAATGCTTTAATCCAAAGGCGTTTTAAAGATGCACTGCTCATGGTCAGGAGACATAGAATTGATTTTAAAAGGAAGC TGGTCCTATCATCTATTATCAATGCTTTAATCGGAAGGCGTTTTAAAGCTGCACTGCTCATGGTCAGGAGACATAGAATTGATTTTAATGTTCTTGTAGA CTACTGTGGTTGGCAAGCATTTGTTGAATCTGCATCAGAATTTGTGCGCCAAATTGATAACTTGAGCTATGTCACCGAGTTTGTATGTGCAGTCAAAAGT GGAAATATCATGGAGTCCTTGTACAAAAACTATGTTTCTCTGTCTGGTCTAAAAGAAACTGACGATGTTCAAGCCAAAGCTCCCGATGTTTATGATAACA AGGTTTCTTCTATCCTGCTTGCTGTAAGGAAGGCTCTTGAGGAACATGTTACTGAAAGTCCCGGAAGGGAACTTTGCATATTGACCACTCTAGCTCGCAG TGAGCCACCAGCCCTTGAAGTGGCTCTAGAGAGAATAAAAGTAATTCGTGAAATGGAATTGTTAGGTTCAGATGATTCTAGGAAGGCAACTTATCCTTCT GCTGAAGAAGCTGTGAAACATCTGTTATGGTTATCTGATTCGGATGCTGTATTTGAAGCAGCTTTAGGTCTTTATGACTTAAACCTGGCTGCTATTGTGG CACTGAATTCTCAGAGAGACCCAAAGGAATTTCTTCCTTATCTAGAGGAGCTAGAAAGGATGCCAAGTCTTATCATGCAGTACAACATTGACCTTAGATT GAATAGGCTTGATAATGCACTCAAGCATCTTGTTACGGCTGGAGATGCTTATTTTATAGATTGCCTGAATCTCTTGAAGAAAAACCCGAAGTTGTCTCCT CTGGGGCTTCAGTTGATCAGTGATTCTACCAAGAGGATGCAGGTTCTTGAGGCCTGGGCTGACCATCTAAGTGACGAGAAGTCCTTTGAGGATGCTGCAA CAACCTATCTCTGCTGTTCCAAATTGGAAAAAGCTTTAAAGGCATATCGTGATTGTGGTAATTGGACAGGGGTCCTCACAGTAGCAGGTCTCCTTAAAAT GGGAAAGGACGAGACAATGCAACTCGCTCATGATCTTTGTGAGGAGCTTCAAGCAATGGGCAAACCAGTAGAAGCTGCCAAGATTGCCTTAGATTATTGT GGAGATGTTCAGAATGGGATAAGCTTATTGATCAGTGCTAGAGAGTGGGAGGAGGCCTTGAGGATTTCTTTTATGCACATGCAAGACAAGTTCGTCTCCG AAGTAAAGAATGCATCTCTGGAATGTGCTGCTACCCTGAGTGGTGAATATGAAGAAGGCATTGAAAAAGTGGGGAAATACTTGACTCGCTACTTGGCTGT TAGACAAAGGCGGCTGCTTCTTGCAGCAAAGCTTAGGTTGGAGGAGCGCTCAGTGAATGATCTGGATGACGATACAGCATCAGAAGCTAGTAGCAACTTC AGTGGAATGAGTGCGTACACCACCGGGACGACGAAAGGCTCCACTGTTTCGGCAAGCTCAAGAGCTACTAGCAGAGCAAAAAGAGAAGCAAGGCGGCAAA AGAGTAAAGGAAAAATTCGCCCGGGAAGCCCTGGGGAGGAGATGGCACTGGTGGAGCATTTGAAGGGTATGTCTCTGGCAACTGGAGCTGTACGGGAGCT GAAATTGTTGCTTTCTTGCCTTATAATGCTCGGGAGTGATCAAGTCGCAAAGAAGCTACAACGAGTTGCAGAGACCTTTCAGCTGTATCAGATGGCAGCA GTGAGATTGGCAGAAGATACATTGGATTCCGACTCCATAAACGAACAGGCACACTCATTAGAGCGTTACGTAGAAAATTTAAGTGCTGACCCGCAAACTT CACTGGCGATGTCTTGGCGCTCTAAAATTTTCATTTCTCCCTATGGAAAGGATATGTAA
AA sequence Show only first row Show all	>Lus10040306 pacid=23174104 polypeptide=Lus10040306 locus=Lus10040306.g ID=Lus10040306.BGIv1.0 annot-version=v1.0 MNNLKLYSEISLNIELQSEDEKLLFSAFDIERNRLFFASSANFVYNTQLSSFQDGKSWKEILLTAEVHLLDLENGDVITSFDYLMEEEALVLGTSNGLLL LHMVDDNATEVVGQVEGGVKCVSPSPDGDLLCVVTGSGQLLVMTHDWDVLYETSIEDHPPDGVDVSAPSSSIISKSSVSWRGDGKYFATLSEVNCTSLSS LGKKLKVWARDSGSLHSMSDPKSFMGAVMEWMPSGAKIAAVYDRKTKDECPAVVFYERNGLYRSSYSINGPKDVTIEVLKWNCASDLLASVVRYDNHDAI KIWHFSNNHWYLKHEVRFPRQDGVSLMWDPIKPLQLIFWTLGGQVTVCNFTWVTSITESSTALVIDDSKILVTPLSLSLMPPPLHLFHLKFPSAVRDVAL HCRGTKNRVAAFLSDGSLCVAELPESDSWEELEGKELCVESSIPDIAFGSLSHLTWLDSHSLLVVSHYGSSHNVCFSHGIPCKEKLRGFYLQEIELMCSE DHVPGLVTNSGWHGKISHKNSLEGLDFLFIVGISDILHGEIESKYQNFFHMGSRKKREEENANFINIWERGAKVVGVLHGDEAAVIIQTTRGNLECIYPR KLVLSSIINALIQRRFKDALLMVRRHRIDFKRKLVLSSIINALIGRRFKAALLMVRRHRIDFNVLVDYCGWQAFVESASEFVRQIDNLSYVTEFVCAVKS GNIMESLYKNYVSLSGLKETDDVQAKAPDVYDNKVSSILLAVRKALEEHVTESPGRELCILTTLARSEPPALEVALERIKVIREMELLGSDDSRKATYPS AEEAVKHLLWLSDSDAVFEAALGLYDLNLAAIVALNSQRDPKEFLPYLEELERMPSLIMQYNIDLRLNRLDNALKHLVTAGDAYFIDCLNLLKKNPKLSP LGLQLISDSTKRMQVLEAWADHLSDEKSFEDAATTYLCCSKLEKALKAYRDCGNWTGVLTVAGLLKMGKDETMQLAHDLCEELQAMGKPVEAAKIALDYC GDVQNGISLLISAREWEEALRISFMHMQDKFVSEVKNASLECAATLSGEYEEGIEKVGKYLTRYLAVRQRRLLLAAKLRLEERSVNDLDDDTASEASSNF SGMSAYTTGTTKGSTVSASSRATSRAKREARRQKSKGKIRPGSPGEEMALVEHLKGMSLATGAVRELKLLLSCLIMLGSDQVAKKLQRVAETFQLYQMAA VRLAEDTLDSDSINEQAHSLERYVENLSADPQTSLAMSWRSKIFISPYGKDM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13680		AtELP1, ELO2, A...	ELONGATA 2, ABA-OVERLY SENSITI...		Lus10040306 [exp]	0	1
AT1G77550			tubulin-tyrosine ligases;tubul...		Lus10027620 [exp]	4.5	0.9016
AT5G13680		AtELP1, ELO2, A...	ELONGATA 2, ABA-OVERLY SENSITI...		Lus10023426 [exp]	4.8	0.9260
AT5G26830			Threonyl-tRNA synthetase (.1)		Lus10005351 [exp]	4.9	0.9073
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10039130 [exp]	5.3	0.9232
AT5G26180			S-adenosyl-L-methionine-depend...		Lus10026452 [exp]	7.7	0.8851
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Lus10011299 [exp]	8.4	0.8934
AT4G10320			tRNA synthetase class I (I, L,...		Lus10041706 [exp]	9.2	0.9008
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Lus10033309 [exp]	12.5	0.8545
AT4G30990			ARM repeat superfamily protein...		Lus10026222 [exp]	15.2	0.8994
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Lus10019778 [exp]	16.5	0.9035

Compare expression of checked genes

Lus10040306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.