Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39510 390 / 8e-135 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 360 / 7e-123 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 311 / 8e-104 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G13670 302 / 2e-100 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 300 / 5e-99 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08300 295 / 1e-97 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 295 / 1e-97 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 293 / 9e-97 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT2G37450 271 / 6e-89 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT2G40900 266 / 5e-86 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023431 [exp] 658 / 0 AT2G39510 425 / 8e-149 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023432 [exp] 447 / 4e-157 AT2G39510 480 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040311 [exp] 436 / 4e-153 AT2G39510 482 / 2e-171 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005965 [exp] 422 / 2e-147 AT2G39510 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029465 [exp] 412 / 1e-143 AT2G39510 456 / 1e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005964 [exp] 405 / 8e-141 AT2G39510 433 / 7e-152 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029464 [exp] 403 / 1e-139 AT2G39510 429 / 2e-150 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10024424 [exp] 343 / 3e-116 AT2G37460 486 / 2e-172 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10028030 [exp] 339 / 8e-115 AT4G08300 455 / 8e-161 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G209200 [exp] 422 / 1e-147 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051500 [exp] 402 / 1e-139 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G082700 [exp] 332 / 2e-112 AT2G37460 488 / 4e-174 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 324 / 8e-109 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176200 [exp] 312 / 5e-104 AT4G08300 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 308 / 2e-102 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051400 [exp] 302 / 2e-100 AT5G13670 405 / 4e-141 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 302 / 7e-100 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176100 [exp] 287 / 8e-95 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.003G192500 [exp] 285 / 2e-93 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10040310 pacid=23173944 polypeptide=Lus10040310 locus=Lus10040310.g ID=Lus10040310.BGIv1.0 annot-version=v1.0 ATGGAGTGGTGGTCATGGAAGCTATGGAACAAAGCGAAGCCGTTCGTGGTGATGATTGCGATGCAATTCGGGTACGCTGGAATGTCAATCATCACCAAGT TCGCTCTCAACGACGGACTCAGCCAGCATGTACTTGTTGTTTACAGACACATCGTTGCCACTGCCGTTATTGCACCCTTTGCCTTCTTCTTTGACAGGAA AGATAGGCCAGAGATGACTCCTCGGATCTTCTTCAAGATAGCATTGCTTGGCTTGTTAGAGCCTGCAATTGATCAGAATCTGTACTATACTGGGATGAAG TTGACAACTGCAACTTTCGCCACTTCCATGAAGAACATTCTCCCTGCCTTCACATTCATCATGGCTTGCTTCTTCCGACTGGAGAAAGTGAATTTGAGGG AGATGCACAGCCAGGGCAAAGTGCTGGGAACAATAGTAACAGTAGGCGGAGCTATGGTGATGACATGCGTCAAAGGTTCCAAATTGGAGCTTCCATGGAA GCTAAGCCTCGGGAGTGCTTCAGCCACAGATTTACCGGAGGATGCTCAGGAACCTGTAAAGGGCAGTCTCATGATCGTCGGCGGATGCATCTCCTGGGCC GGTTTCATGATTCTTCAATCAGTGGCTGTGAGAGAGTACCCGGCGGAGTTGACCTTGACCGCATTGATATGCATGATGGGAGCCATTGAAGGATCTGTTG CTGCAGTTTGGCTTGAATGGGGCAACCCTTCTGCTTGGCACATTGCCTTGGACACCAAGTTGCTTGCTTGCGTTTATACCGGAGTGATATGTTCTGGAGT GGCGTACTATGCTCAAGGAGTGGTGATGAGGAGTCGAGGTCCGGTGTTCGTCACAGCGTTCAATCCGTTGGGGATGGTTATCGTCACGATTGCCGGCGCC TTCTTCTTGTCCGAGGAACTCTATTTAGGAAGGGTAATCGGAGCAGTGGTAATAGTGGTCGGACTATATCTTGTGCTGTGGGGGAAGAAAAAAGACGTAG AGCAGCAGAGCAACATCAACAACGACGGCGACGGCGACGACGCTAATAGTATCGATATCGTGACTGCTGAAGTCATTCGTATCAACGATACTACTCATAA TCAAAACGTCATTTCCTTCGAAATTTCAACTGTCTGA
AA sequence Show only first row Show all	>Lus10040310 pacid=23173944 polypeptide=Lus10040310 locus=Lus10040310.g ID=Lus10040310.BGIv1.0 annot-version=v1.0 MEWWSWKLWNKAKPFVVMIAMQFGYAGMSIITKFALNDGLSQHVLVVYRHIVATAVIAPFAFFFDRKDRPEMTPRIFFKIALLGLLEPAIDQNLYYTGMK LTTATFATSMKNILPAFTFIMACFFRLEKVNLREMHSQGKVLGTIVTVGGAMVMTCVKGSKLELPWKLSLGSASATDLPEDAQEPVKGSLMIVGGCISWA GFMILQSVAVREYPAELTLTALICMMGAIEGSVAAVWLEWGNPSAWHIALDTKLLACVYTGVICSGVAYYAQGVVMRSRGPVFVTAFNPLGMVIVTIAGA FFLSEELYLGRVIGAVVIVVGLYLVLWGKKKDVEQQSNINNDGDGDDANSIDIVTAEVIRINDTTHNQNVISFEISTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10040310 [exp]	0	1
AT1G74220			unknown protein		Lus10040518 [exp]	2.8	0.9870
AT1G50380			Prolyl oligopeptidase family p...		Lus10032964 [exp]	3.9	0.9861
AT1G21850		SKS8	SKU5 similar 8 (.1)		Lus10022648 [exp]	8.7	0.9886
AT1G29010			unknown protein		Lus10013977 [exp]	9.2	0.9589
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006838 [exp]	10.5	0.8859
AT5G59100			Subtilisin-like serine endopep...		Lus10016484 [exp]	10.6	0.8792
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10039863 [exp]	17.7	0.9852
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040324 [exp]	19.2	0.9429
AT5G59120		ATSBT4.13	subtilase 4.13 (.1)		Lus10040750 [exp]	19.7	0.9816
					Lus10011078 [exp]	21.6	0.9816

Compare expression of checked genes

Lus10040310 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.