Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39510 482 / 3e-171 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 423 / 5e-148 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 360 / 4e-123 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 351 / 2e-119 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G13670 344 / 6e-117 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 337 / 6e-114 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G08300 335 / 1e-113 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37450 330 / 3e-112 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G44800 331 / 5e-112 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 312 / 3e-104 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023432 [exp] 723 / 0 AT2G39510 480 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005965 [exp] 593 / 0 AT2G39510 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029465 [exp] 586 / 0 AT2G39510 456 / 1e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005964 [exp] 544 / 0 AT2G39510 433 / 7e-152 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029464 [exp] 538 / 0 AT2G39510 429 / 2e-150 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023431 [exp] 463 / 9e-164 AT2G39510 425 / 8e-149 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040310 [exp] 460 / 1e-162 AT2G39510 430 / 1e-150 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10024424 [exp] 433 / 1e-151 AT2G37460 486 / 2e-172 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10025308 [exp] 436 / 2e-147 AT2G37460 487 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G209200 [exp] 538 / 0 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051500 [exp] 526 / 0 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G082700 [exp] 413 / 2e-144 AT2G37460 488 / 4e-174 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 375 / 5e-129 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051400 [exp] 374 / 9e-129 AT5G13670 405 / 4e-141 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176200 [exp] 366 / 2e-125 AT4G08300 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 359 / 2e-122 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 355 / 6e-121 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176100 [exp] 337 / 3e-114 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.001G032500 [exp] 333 / 2e-112 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10040311 pacid=23174148 polypeptide=Lus10040311 locus=Lus10040311.g ID=Lus10040311.BGIv1.0 annot-version=v1.0 ATGGAGTGCTTGTCATCCAAGTTGTGTAACCAAGCAAAGCCATTTCTGGCTGTGACATTCATGCAGTTTGGGTATGCTGGAATGTCCATCATCTCAAAGT TTGCTCTCAACCAAGGAATGAGTCAACATGTTCTTGTTGTCTACAGACATGCCGTTGCCACTGCTGTTCTTGCCCCCTTTGCCTTCTACTTCGACAGGAA GGTGAGACCAAAGATGACATGGGGGATATTCCTCAAGATAGCACTCCTTGGTTTGTTAGAGCCGACCATTGATCAGAACTTGTATTACACTGGTATGAAG TACACATCAGCAACTTTTGCTGCTGCAATGTGCAATGTCCTCCCTGCCTTTGCATTCCTCATGGCGTGGGCATTAAGGCTTGAGAAAGTTAAGTTGAAGA AGGTGCACAGCCAGGCAAAGATTTTGGGGACAGTTGTGACAGTTGGGGGAGCCATGTTGATGACTTTGATCAAAGGTGCAAGATTGGACATGCCATGGAC CAAAGGAATTGACCATTCCTCTGCAACTTCACTTGTAGCTCAAGATCCTGTAAAGGGTGCTGTCATGATAGCTGTTGGCTGCATTTGCTGGGCTGGTTTC ATCATCCTTCAAGCAATCACCTTGAAATCTTACCCAGCCGAGTTCTCCTTGGCTGCTTTGATCTGCATGATGGGAACGATTGAAGGCTCAGTTTTCGCCA TTGGGATGGAGTGGGGGAACCCTTCTGCTTGGGTTGTTGGCTTTGACGCCAAGTTACTAGCTGCTGTTTATAGTGGTGTGATATGCTCCGGAATGGCATA CTACATACAAGGAGTGGTGATGCAGACGAAAGGGCCTGTTTTCGTGACAGCATTCAGCCCTTTGAGCATGGTGATAGTCACAATCATGGGTTCCATTTTC TTGTCTGAGATTCTTTACATGGGAAGAGTTGTTGGAGCAATTGTGATAGTGACAGGATTGTACATGGTGCTGTGGGGTAAGACCAAAGATGAACCTCTAA CCAATTCCAATGACAAGGTGGCTGATTTGCCACCAGTTACTGCTGCTGCTGGTTCACCAGCAGATGGAGAGTTTGTTTCCATTGAAGTTTCAAGAGCTTG A
AA sequence Show only first row Show all	>Lus10040311 pacid=23174148 polypeptide=Lus10040311 locus=Lus10040311.g ID=Lus10040311.BGIv1.0 annot-version=v1.0 MECLSSKLCNQAKPFLAVTFMQFGYAGMSIISKFALNQGMSQHVLVVYRHAVATAVLAPFAFYFDRKVRPKMTWGIFLKIALLGLLEPTIDQNLYYTGMK YTSATFAAAMCNVLPAFAFLMAWALRLEKVKLKKVHSQAKILGTVVTVGGAMLMTLIKGARLDMPWTKGIDHSSATSLVAQDPVKGAVMIAVGCICWAGF IILQAITLKSYPAEFSLAALICMMGTIEGSVFAIGMEWGNPSAWVVGFDAKLLAAVYSGVICSGMAYYIQGVVMQTKGPVFVTAFSPLSMVIVTIMGSIF LSEILYMGRVVGAIVIVTGLYMVLWGKTKDEPLTNSNDKVADLPPVTAAAGSPADGEFVSIEVSRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10040311 [exp]	0	1
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10023432 [exp]	3.6	0.8404
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Lus10016752 [exp]	11.6	0.8592
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10023035 [exp]	15.7	0.8797
AT4G05220			Late embryogenesis abundant (L...		Lus10020066 [exp]	18.3	0.8398
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Lus10024868 [exp]	19.1	0.8498
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10006245 [exp]	22.2	0.8334
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10040394 [exp]	22.5	0.8581
AT4G00335		RHB1A	RING-H2 finger B1A (.1.2.3)		Lus10017788 [exp]	23.8	0.8460
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10038639 [exp]	28.5	0.7988
AT5G45310			unknown protein		Lus10001616 [exp]	28.8	0.8016

Compare expression of checked genes

Lus10040311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.