Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28710 100 / 1e-26 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G37430 99 / 5e-26 C2H2ZnF ZAT11 C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G59820 97 / 1e-25 C2H2ZnF ZAT12, RHL41 RESPONSIVE TO HIGH LIGHT 41, C2H2-type zinc finger family protein (.1) AT3G53600 94 / 4e-24 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G46070 93 / 8e-24 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G46080 92 / 1e-23 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G28200 94 / 4e-23 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G46090 87 / 9e-22 C2H2ZnF ZAT7 C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G04390 80 / 1e-17 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G03510 79 / 1e-17 C2H2ZnF C2H2-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023433 [exp] 262 / 4e-90 AT2G28710 117 / 1e-33 C2H2-type zinc finger family protein (.1) Lus10030330 [exp] 151 / 3e-46 AT2G37430 125 / 2e-36 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10024428 [exp] 114 / 5e-32 AT2G37430 157 / 4e-49 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10021409 [exp] 88 / 3e-21 AT3G10470 157 / 4e-46 C2H2-type zinc finger family protein (.1) Lus10022610 [exp] 84 / 4e-20 AT2G28200 147 / 1e-43 C2H2-type zinc finger family protein (.1) Lus10040425 [exp] 81 / 3e-19 AT5G04390 159 / 5e-48 C2H2-type zinc finger family protein (.1) Lus10023540 [exp] 81 / 2e-18 AT5G04390 179 / 3e-54 C2H2-type zinc finger family protein (.1) Lus10023912 [exp] 79 / 8e-18 AT5G03510 160 / 1e-47 C2H2-type zinc finger family protein (.1) Lus10032848 [exp] 68 / 1e-13 AT1G27730 149 / 1e-43 salt tolerance zinc finger (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G209400 [exp] 138 / 1e-41 AT2G28710 129 / 2e-38 C2H2-type zinc finger family protein (.1) Potri.008G051200 [exp] 129 / 8e-38 AT2G28710 130 / 8e-39 C2H2-type zinc finger family protein (.1) Potri.009G027700 [exp] 110 / 3e-30 AT5G59820 126 / 5e-37 RESPONSIVE TO HIGH LIGHT 41, C2H2-type zinc finger family protein (.1) Potri.001G235800 [exp] 103 / 7e-28 AT2G37430 133 / 2e-39 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.006G121600 [exp] 87 / 6e-21 AT5G04390 136 / 4e-38 C2H2-type zinc finger family protein (.1) Potri.004G216900 [exp] 88 / 7e-21 AT2G28200 172 / 4e-52 C2H2-type zinc finger family protein (.1) Potri.010G229400 [exp] 88 / 8e-21 AT5G04390 185 / 3e-56 C2H2-type zinc finger family protein (.1) Potri.009G004800 [exp] 82 / 1e-18 AT2G28200 182 / 7e-56 C2H2-type zinc finger family protein (.1) Potri.016G098100 [exp] 79 / 1e-17 AT2G28200 182 / 6e-56 C2H2-type zinc finger family protein (.1) Potri.008G032300 [exp] 77 / 9e-17 AT5G04390 207 / 1e-64 C2H2-type zinc finger family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040312 pacid=23173819 polypeptide=Lus10040312 locus=Lus10040312.g ID=Lus10040312.BGIv1.0 annot-version=v1.0 ATGATGAACATGCAAGAAACTACTGGAGAAATTCTTAACCTAACAGTGGCCAACTGCCTCATGATGCTCTCTCAACAACCTCAATACGACATCGTCGTTA GCGAGCGCAGATCCTCCTCCCCGAGCCGGGTCTTCGAGTGCAAGACATGCAACCGGCAATTCTCTTCCTTTCAAGCCCTTGGAGGACACCGTGCAAGTCA CAAGAAGCATCCACTGCCAACAGGATCTCCCGGAGGGTCTTTAGAGGTCGGTGGCCACCGGAAAAAGCAGGTGTTACCTACCAAGCCCAAAGCTCATCGA TGCTCCGTGTGTGGGCTTGAGTTTCCCGTAGGCCAGGCCCTTGGTGGCCACATGAGGAGGCATAGAGCCGCACCTGGCCTGACGGTTGTAGCCACCGCCA CCACCTTCGTATCTGCTGGTGGTGACAGCAGCGGTGGATCTGAACAGAGTTCGGAGAGTCTGACGCTACAAATGAAGAAAGCTAGAGTTTCGAGTCTCGA CTTGAACTTGACGCCTTATGAGAATGATGTGAAGCTGCTCAAGCTTGGGACAAATTACAATGCATCCATGGTGGATTTTTTCCATTAA
AA sequence Show only first row Show all	>Lus10040312 pacid=23173819 polypeptide=Lus10040312 locus=Lus10040312.g ID=Lus10040312.BGIv1.0 annot-version=v1.0 MMNMQETTGEILNLTVANCLMMLSQQPQYDIVVSERRSSSPSRVFECKTCNRQFSSFQALGGHRASHKKHPLPTGSPGGSLEVGGHRKKQVLPTKPKAHR CSVCGLEFPVGQALGGHMRRHRAAPGLTVVATATTFVSAGGDSSGGSEQSSESLTLQMKKARVSSLDLNLTPYENDVKLLKLGTNYNASMVDFFH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37430	C2H2ZnF	ZAT11	C2H2 and C2HC zinc fingers sup...		Lus10040312 [exp]	0	1
AT2G43870			Pectin lyase-like superfamily ...		Lus10011419 [exp]	2.2	0.8410
AT2G25735			unknown protein		Lus10007679 [exp]	22.7	0.7963
AT1G71050		HIPP20	heavy metal associated isopren...		Lus10016708 [exp]	52.4	0.7688
AT5G61820			unknown protein		Lus10003210 [exp]	54.3	0.7920
AT5G12890			UDP-Glycosyltransferase superf...		Lus10025515 [exp]	87.9	0.7520
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10018983 [exp]	88.4	0.7278
AT2G14510			Leucine-rich repeat protein ki...		Lus10028407 [exp]	141.4	0.7470
AT2G43870			Pectin lyase-like superfamily ...		Lus10002123 [exp]	149.1	0.7256
AT2G33580			Protein kinase superfamily pro...		Lus10037389 [exp]	174.9	0.7291
AT1G18010			Major facilitator superfamily ...		Lus10009416 [exp]	222.0	0.7201

Compare expression of checked genes

Lus10040312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.