Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39470 253 / 4e-85 PnsL1, PPL2 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3) AT3G55330 141 / 1e-41 PPL1 PsbP-like protein 1 (.1) AT4G15510 55 / 1e-08 Photosystem II reaction center PsbP family protein (.1.2.3) AT3G05410 49 / 1e-06 Photosystem II reaction center PsbP family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023436 [exp] 419 / 5e-151 AT2G39470 255 / 3e-86 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3) Lus10030326 [exp] 158 / 2e-47 AT3G55330 268 / 7e-91 PsbP-like protein 1 (.1) Lus10003289 [exp] 155 / 7e-47 AT3G55330 267 / 7e-91 PsbP-like protein 1 (.1) Lus10018931 [exp] 52 / 6e-08 AT1G77090 359 / 1e-126 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10028633 [exp] 52 / 7e-08 AT1G77090 348 / 3e-122 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10000614 [exp] 51 / 2e-07 AT4G15510 308 / 9e-106 Photosystem II reaction center PsbP family protein (.1.2.3) Lus10000352 [exp] 50 / 5e-07 AT4G15510 309 / 4e-106 Photosystem II reaction center PsbP family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G210000 [exp] 275 / 3e-94 AT2G39470 278 / 3e-95 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3) Potri.010G210200 [exp] 147 / 9e-44 AT3G55330 299 / 2e-103 PsbP-like protein 1 (.1) Potri.008G050300 [exp] 71 / 9e-15 AT3G55330 164 / 8e-51 PsbP-like protein 1 (.1) Potri.005G010700 [exp] 49 / 1e-06 AT4G15510 319 / 4e-110 Photosystem II reaction center PsbP family protein (.1.2.3) Potri.013G006500 [exp] 47 / 2e-06 AT4G15510 306 / 5e-105 Photosystem II reaction center PsbP family protein (.1.2.3) Potri.006G246500 [exp] 41 / 0.0003 AT5G11450 352 / 2e-122 PsbP domain protein 5, Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0619 [flax] [poplar] Mog1p_PsbP PF01789 [flax] [poplar] PsbP PsbP
Representative CDS sequence Show only first row Show all	>Lus10040314 pacid=23174076 polypeptide=Lus10040314 locus=Lus10040314.g ID=Lus10040314.BGIv1.0 annot-version=v1.0 ATGGCTGTAGCATCATCACTCTCATTGAGCTTGTTTTCAACAGCAGCAGCAGTGAAAAGAGTCACTCTTTCTTCCTTATCAGCCACCAATGACCCGTCCA TCGGCTTGTCGCCGGAGCACGACGGAGAAGCCAGCAATTTGAAGAGAAGAAGACAGTTGCTTGTTGGGCTTGGAGGAGCAGTTGCTGCAAGCACCCTACT TCCGATTCACTCTGCTTCTGCTGAAGAGATGATGAAGATGTACCGAACTTACATCGACCAGGAAGACGGGTACACTTACATCTACCCATCAGATTGGAGG GATTTTGATTTCCGGGGGCATGATTCGGCGTTCAAGGACAGGTACATGCAGCTGCATAATGTGAGGGTGAGGTTCATACCAACGAAGAAGAAGGATATCC ATGAGTTTGGTCCAATGGAGCAAGTCATCACCGATTTGATCAGTAAAGTCTACGCTGCTCCTACTCAAAGACCCACCATTTACTCCATGGAAGAGAAAAA CGTGGAAGGGACGAACTACTACACGTTCGAGTATGAGCTGAGGTCTCCGAACTACGCCAGTGTCTCCTTCGCCACCATAGCTATCGCTAACGGGAGGTAT TACACGCTGATAGTTGGTGCAAACGAGAGACGGTGGAAACGATATCGTAACCAGCTCAAAGTCGTTGCTGATTCTTTCAAGTTGCTTGAAATCTGA
AA sequence Show only first row Show all	>Lus10040314 pacid=23174076 polypeptide=Lus10040314 locus=Lus10040314.g ID=Lus10040314.BGIv1.0 annot-version=v1.0 MAVASSLSLSLFSTAAAVKRVTLSSLSATNDPSIGLSPEHDGEASNLKRRRQLLVGLGGAVAASTLLPIHSASAEEMMKMYRTYIDQEDGYTYIYPSDWR DFDFRGHDSAFKDRYMQLHNVRVRFIPTKKKDIHEFGPMEQVITDLISKVYAAPTQRPTIYSMEEKNVEGTNYYTFEYELRSPNYASVSFATIAIANGRY YTLIVGANERRWKRYRNQLKVVADSFKLLEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39470		PnsL1, PPL2	Photosynthetic NDH subcomplex...		Lus10040314 [exp]	0	1
AT3G15840		PIFI	post-illumination chlorophyll ...		Lus10025847 [exp]	2.0	0.9614
AT3G01440		PnsL3, PQL2, PQ...	PsbQ-like 2, Photosynthetic ND...		Lus10035839 [exp]	4.5	0.9507
AT4G04330		AtRbcX1	homologue of cyanobacterial Rb...		Lus10011972 [exp]	6.5	0.9155
AT3G15840		PIFI	post-illumination chlorophyll ...		Lus10038253 [exp]	6.6	0.9329
AT1G51110			Plastid-lipid associated prote...		Lus10010444 [exp]	7.7	0.9391
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10012126 [exp]	11.8	0.9103
AT2G39470		PnsL1, PPL2	Photosynthetic NDH subcomplex...		Lus10023436 [exp]	15.0	0.9271
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10029755 [exp]	16.2	0.9177
AT3G01440		PnsL3, PQL2, PQ...	PsbQ-like 2, Photosynthetic ND...		Lus10036622 [exp]	18.0	0.9009
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10042784 [exp]	18.3	0.9150

Compare expression of checked genes

Lus10040314 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.