Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55320 2287 / 0 ABCB20, PGP20 ATP-binding cassette B20, P-glycoprotein 20 (.1) AT2G39480 2277 / 0 ABCB6, PGP6 ATP-binding cassette B6, P-glycoprotein 6 (.1) AT2G36910 531 / 2e-165 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT4G25960 510 / 8e-158 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT3G28860 508 / 3e-157 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT1G10680 506 / 8e-157 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT1G27940 494 / 3e-152 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT1G28010 475 / 4e-145 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT3G62150 468 / 3e-142 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT4G01830 463 / 5e-141 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023437 [exp] 2655 / 0 AT3G55320 2420 / 0.0 ATP-binding cassette B20, P-glycoprotein 20 (.1) Lus10035834 [exp] 772 / 0 AT3G28345 1271 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10005249 [exp] 521 / 6e-162 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10023929 [exp] 522 / 1e-161 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10030674 [exp] 520 / 1e-161 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10004571 [exp] 484 / 4e-149 AT4G25960 1732 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Lus10014427 [exp] 484 / 1e-148 AT2G36910 1913 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10017271 [exp] 478 / 9e-145 AT1G27940 1689 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10036617 [exp] 462 / 2e-144 AT3G28345 764 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G210100 [exp] 2356 / 0 AT3G55320 2237 / 0.0 ATP-binding cassette B20, P-glycoprotein 20 (.1) Potri.008G050400 [exp] 2337 / 0 AT3G55320 2223 / 0.0 ATP-binding cassette B20, P-glycoprotein 20 (.1) Potri.018G141400 [exp] 754 / 0 AT3G28345 1204 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G081100 [exp] 530 / 1e-165 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.016G093600 [exp] 515 / 5e-159 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.003G094400 [exp] 512 / 7e-159 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.006G123900 [exp] 509 / 1e-156 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.001G139600 [exp] 504 / 9e-156 AT4G25960 1962 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.001G139700 [exp] 487 / 1e-149 AT4G25960 1875 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.014G113000 [exp] 482 / 2e-147 AT3G62150 1767 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10040315 pacid=23173889 polypeptide=Lus10040315 locus=Lus10040315.g ID=Lus10040315.BGIv1.0 annot-version=v1.0 ATGATGGTCTCACGGGGACTGTTCGGTTGGTCCCCGCCTCACATTCAGCCGTTGACGCCTGTTTCTGAGGTATCGGAGCCGCCGGAGTCCCCATCGCCGT ACCTCGACGTCAGCGCTGAGTCTGCCGCAGCTGCGGCAGCTGTACAGGCGGAAGCGGAGGAGGAGATGGAAGAAGCTGAGGAAATGGAGCAGCCTCCAGC TGCCGTGCCGTTCTCCAGGCTGTTTGCTTGTGCAGACCGGCTGGATTGGGCGCTTATGATCGTTGGCTCGATTGCTGCGGCTGCACATGGGACTGCTCTT GTGGTTTACTTGCATTATTTCGCGAAGGTTATCGAGGTCATGAGGATTGGGAGTAGTGCCAGTGCGGAGGAGCGGTATGATAAGTTCATGGATCTTGCTT TAACCATTGTTTATATAGCGGGGGGTGTTTTTGCTGCTGGTTGGATAGAGGTATCATGTTGGATTCTAACCGGAGAACGTCAGACTGCCGTCATCAGGTC AAATTATGTTCAAGTACTACTTAACCAAGACATGAGTTTTTTTGACACATATGGTAATAATGGGGACATTGTTAGCCAAGTATTGAGTGATGTGCTTCTC ATTCAATCTGCTCTTAGCGAAAAGGTCGGAAACTATATACATAACATGGCTACATTTTTCGCTGGTCTTGCTATTGGATTCACCAATTGCTGGCAGATCA CACTCATAACGTTAGCCACGGGCCCATTCATTGTTGCCGCAGGAGGAATATCTAATATATTTCTCCAACGACTTGCAGAAAGTATTCAGGATGCATATTC TGAAGCGGCGAGCATTGCTGAACAGGCGGTGTCTTACATAAGAACTTTGTATGCTTTCACAAACGAAACTTTGGCGAAGCATTCATATGCAAACTCGCTC CAAGCAACTCTAAGATACGGAATTTTGATTAGTCTTGTACAAGGACTTGGACTTGGCTTTACTTATGGGCTGGCAATATGTTCTTGTGCCTTGCAACTTT GGGTTGGAAGGTTCCTGGTTACACATCAGAAGGCTCATGCTGGTGAAATCGTGACAGCACTCTTTGCTGTGATTTTGAGTGGCCTAGGGCTAAATCAAGC AGCAACAAACTTCTATTCATTCGACCAAGGTCGAGTTGCTGCTTATAGACTTTTCGAGATGATAAGCAGGTCATCCTCAACAGTTAATCAAGAAGGGAGC ATCTTATCTTCAGTTCAAGGAAATATTGAGTTTCGGAATGTATATTTTAGCTATCTGTCTCGTCCTGAAATTCCTATTTTGAGTGGCTTTTACCTCACTG TACCTGCAAAAAAGACCGTTGCACTTGTTGGCAGAAACGGGTCAGGAAAAAGTAGTATCATCCCGCTTATGGAGCGGTTCTATGATCCTACCTTAGGAGA AGTTCTTCTTGATGGAGAGAATATAAAAAATTTGAAACTGGAATGGCTAAGAAGCCAAATCGGGCTTGTCACCCAGGAGCCTGCTTTGTTAAGTCTAAGT ATAAGAGACAATATTGCTTATGGACGTGATGCTACTCCAGATCAGATTGAAGAGGCAGCAAAAATAGCTCATGCCCATACCTTTATCAGCTTATTGGATG ATGGATATGCAACTCAGGTGGGTAGGGCGGGCATATCCTTGTCAGAGGAGCAGAAAATTAAACTTTCTATTGCTCGGGCAGTGCTTTTAAACCCAGCGGT TCTTCTGCTTGATGAGGTTACTGGAGGGCTTGACTTTGAAGCTGAGAGGGCAGTTCAAGAGGCCCTTGATCTCCTCATGCTGGGACGATCAACAATAATA ATTGCTCGACGTCTTAGTCTCATTAGGAATGCTGATTATATTGCTGTTATGGAAGAAGGTCAGCTTGTTGAAATGGGTACGCATGATGAATTGTTGACCT TAGACGGGTTGTACGCAGAGCTTCTGAAATGTGAAGAAGCTGCAAAGCTGCCCAGGAGAATGCCAGTTAAAAATTACATGGATGCTTTCCAAGTTGAAAA AGATTCCTCCGCTAGTCACAGCTTCCAAGAACCGTCCTCTCCCAAATTTTCCAAGTCTCCTTCTCTTCAGAGAGTTCATGGAGTCTTGCGTCCTCCTGAT GGCACCTACAGTTTGCACGAGTCTCCAAAAGATCAGAGTCCCCCTTCGGAGACAATGTTGAAAAATGGCCTCTCTGTGGATGGAACAGAAAAGGAACCAT CAATCGTAAGGCAAGATAGTTTTGAAATGAGACTTCCTGAGCTACCCAAGATTGATGTCCATTCAATAGCTCAACAGAAAACAAATGGATCTGACCCTGA ATCACCTGTATCTCCACTTTTGATATCTGATCCTAAAAATGAGCGTTCACACTCTCAGACTTTCAGTAGACCCCATAGTCACTCTGATGACTTTCCTAGT AATCTTAAGGATTCAAAGGATGCAAAGCATCGTGAAGCACCATCTTTTCAGAGACTTGCAGAACTCAGCTTTGCAGAATGGCTTTATGCTGTGTTAGGAA GCATTGGTGCAGCTATATTTGGCTCATTCAATCCACTTCTAGCTTATGTGATTGCTTTGATAGTTACTGCTTATCATAGAAGGGATGAACATTCTCACTT GCGACATGAGGTAGACAAATGGTGCTTGATAATCGCCTGCATGGGTATCGTAACAGTTATTGCAAATTTTTTACAGCATTTCTATTTTGGTATTATGGGG GAGAAAATGACAGAACGGGTGCGGAGAATGATGTTCTCAGCAATGCTGCGAAATGAAGTTGGATGGTTTGACGATGAGGAGAATAGTGCAGACACATTAT CAATGCGGTTGGCGAATGATGCCACATTTGTGCGAGCTGCATTTAGCAACCGACTTTCAATATTCATACAAGACAGTTCTGCAGTGATTGTGGCTGTTAT CATTGGGATGTTACTACAATGGCGATTGGCCCTGGTAGCATTGGCAACCCTTCCTGTGCTCACCATTTCTGCAGTTGCGCAGAAATTGTGGCTTGCTGGA TTTTCAAGGGGCATTCAGGAGATGCATCGGAAGGCTTCATTGGTTCTTGAGGATGCTGTTAGAAACATCTACACAGTCGTATCTTTCTGTGCTGGTAATA AAGTTATGGAACTCTACAGGTCACAGCTCCAGCAAATATTCAAGAAGAGCTTTTTGCACGGCGTGGTCATTGGGTTTGCATTTGGCTTTTCACAGTTTCT TCTCTTTGCCTGTAATGCTCTACTGCTCTGGTATACTGCACATGCTGTGAAGAAAGGCCACATGAGTTTGTCGACAGCTCTCAAGGAATACATGGTTTTC TCTTTTGCAAGCTTTGCACTGGTGGAGCCTTTTGGATTGGCACCTTACATACTTAAGCGGCGAAAATCCCTTATCTCAGTGTTTGATATTATAGATAGAG TGCCGAAGATTGAGCCTGACGAGACCTCAGCACTGAAACCTCCAAACAATGTTGATTTCTGCTACCCGACCCGTCCAGAACTCTTAGTATTAAGCAATTT CAGTCTCAAAATCAACGGTGGACAAACTATAGCCGTGGTGGGTGTATCAGGTTCGGGAAAGAGCACTATCATATCTCTGATTGAGAGATTCTACGACCCA GTTGCTGGTCAGATTCTACTCGATGGCCGCGATTTGAAGCTTTACAACTTGAGATGGTTGAGAAGCCACATGGGTCTTGTGCAGCAGGAACCGATTATAT TCTCAACGACCATACGAGAAAATATCATCTATGCTAGGCACAATGCCAGTGAAGCCGAAATGAAAGAAGCTGCTAGAATAGCAAACGCTCATCATTTCAT CAGCAGTCTGCCTCATGGTTACGACACTTACGTCGGGATGAGAGGTGTGGACTTGACACCGGGGCAGAAGCAACGAATTGCCATTGCCCGTGTGGTGCTG AAGAACGCACCGATACTACTACTTGATGAAGCTAGTTCATCGATTGAATCCGAATCGAGCCGGGTGGTACAGGAGGCACTCGATACTCTGATAATGGGGA ACAAGACGACCATCTTGATAGCCCATAGAGCGGCGATGATGAGACATGTTGACAATATTGTAGTTCTGAACGGAGGACGAATCGTAGAGGAAGGGTCCCA CGACTCTTTGATGGCAAAGAATGGGTTATATGTCAGATTAATGCAGCCTCACTTCGGGAAGGGCTTGCGTCAACATCGTCTCATTTAG
AA sequence Show only first row Show all	>Lus10040315 pacid=23173889 polypeptide=Lus10040315 locus=Lus10040315.g ID=Lus10040315.BGIv1.0 annot-version=v1.0 MMVSRGLFGWSPPHIQPLTPVSEVSEPPESPSPYLDVSAESAAAAAAVQAEAEEEMEEAEEMEQPPAAVPFSRLFACADRLDWALMIVGSIAAAAHGTAL VVYLHYFAKVIEVMRIGSSASAEERYDKFMDLALTIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSNYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLL IQSALSEKVGNYIHNMATFFAGLAIGFTNCWQITLITLATGPFIVAAGGISNIFLQRLAESIQDAYSEAASIAEQAVSYIRTLYAFTNETLAKHSYANSL QATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHQKAHAGEIVTALFAVILSGLGLNQAATNFYSFDQGRVAAYRLFEMISRSSSTVNQEGS ILSSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKTVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLS IRDNIAYGRDATPDQIEEAAKIAHAHTFISLLDDGYATQVGRAGISLSEEQKIKLSIARAVLLNPAVLLLDEVTGGLDFEAERAVQEALDLLMLGRSTII IARRLSLIRNADYIAVMEEGQLVEMGTHDELLTLDGLYAELLKCEEAAKLPRRMPVKNYMDAFQVEKDSSASHSFQEPSSPKFSKSPSLQRVHGVLRPPD GTYSLHESPKDQSPPSETMLKNGLSVDGTEKEPSIVRQDSFEMRLPELPKIDVHSIAQQKTNGSDPESPVSPLLISDPKNERSHSQTFSRPHSHSDDFPS NLKDSKDAKHREAPSFQRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIALIVTAYHRRDEHSHLRHEVDKWCLIIACMGIVTVIANFLQHFYFGIMG EKMTERVRRMMFSAMLRNEVGWFDDEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSSAVIVAVIIGMLLQWRLALVALATLPVLTISAVAQKLWLAG FSRGIQEMHRKASLVLEDAVRNIYTVVSFCAGNKVMELYRSQLQQIFKKSFLHGVVIGFAFGFSQFLLFACNALLLWYTAHAVKKGHMSLSTALKEYMVF SFASFALVEPFGLAPYILKRRKSLISVFDIIDRVPKIEPDETSALKPPNNVDFCYPTRPELLVLSNFSLKINGGQTIAVVGVSGSGKSTIISLIERFYDP VAGQILLDGRDLKLYNLRWLRSHMGLVQQEPIIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTYVGMRGVDLTPGQKQRIAIARVVL KNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGSHDSLMAKNGLYVRLMQPHFGKGLRQHRLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55320		ABCB20, PGP20	ATP-binding cassette B20, P-gl...		Lus10040315 [exp]	0	1
AT3G55320		ABCB20, PGP20	ATP-binding cassette B20, P-gl...		Lus10023437 [exp]	1.0	0.9475
AT5G35430			Tetratricopeptide repeat (TPR)...		Lus10039983 [exp]	7.5	0.8939
AT3G58560			DNAse I-like superfamily prote...		Lus10016206 [exp]	8.4	0.9176
					Lus10014954 [exp]	8.8	0.9189
AT3G11960			Cleavage and polyadenylation s...		Lus10013542 [exp]	8.9	0.9200
AT3G14010		CID4	CTC-interacting domain 4 (.1.2...		Lus10037656 [exp]	10.6	0.9088
AT4G30100			P-loop containing nucleoside t...		Lus10020914 [exp]	11.9	0.9220
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10019875 [exp]	12.5	0.8867
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10035973 [exp]	15.2	0.9250
AT2G47330			P-loop containing nucleoside t...		Lus10037527 [exp]	16.9	0.8990

Compare expression of checked genes

Lus10040315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.