Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55280 185 / 2e-60 RPL23A2, RPL23AB RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) AT2G39460 182 / 2e-59 RPL23A1, RPL23AA, ATRPL23A RIBOSOMAL PROTEIN L23A1, ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN L23A, ribosomal protein L23AA (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023438 [exp] 218 / 2e-73 AT3G55280 206 / 4e-69 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10030325 [exp] 218 / 2e-73 AT3G55280 204 / 1e-68 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10003290 [exp] 215 / 2e-72 AT3G55280 207 / 8e-70 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10005441 [exp] 213 / 3e-71 AT3G55280 208 / 8e-70 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10004942 [exp] 212 / 3e-71 AT3G55280 207 / 7e-70 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10005883 [exp] 209 / 4e-70 AT3G55280 205 / 7e-69 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10040865 [exp] 213 / 9e-66 AT5G59750 714 / 0.0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2) Lus10025302 [exp] 88 / 3e-22 AT3G55280 98 / 8e-27 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Lus10024430 [exp] 88 / 3e-22 AT3G55280 98 / 8e-27 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G027000 [exp] 204 / 5e-68 AT3G55280 199 / 2e-66 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.008G050200 [exp] 202 / 3e-67 AT3G55280 187 / 8e-62 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.010G210300 [exp] 202 / 3e-67 AT3G55280 195 / 7e-65 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.016G079800 [exp] 199 / 4e-66 AT3G55280 187 / 5e-62 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3) Potri.006G213300 [exp] 197 / 2e-65 AT3G55280 204 / 1e-68 RIBOSOMAL PROTEIN L23A2, ribosomal protein L23AB (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00276 [flax] [poplar] Ribosomal_L23 Ribosomal protein L23 PF03939 [flax] [poplar] Ribosomal_L23eN Ribosomal protein L23, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10040316 pacid=23174226 polypeptide=Lus10040316 locus=Lus10040316.g ID=Lus10040316.BGIv1.0 annot-version=v1.0 ATGCCTGAAGGATATACTGTGTTGGATACTCAGATGATTCCTGAGAACCTTGTGATAATTTGGAGATTGAAAAAGCCTTGCACCCATTTTGCAGCTGATG TTACGAAGAAGGCCGATCCAAAGGCACAGGCAACTAAGGCTGCCAAGGCTGTGAAGTCAGGGCCAACTTTCAAGAGGAACCCTAAGAAGATCAGGACTAA GGTCACATTCCACCGCCCCAGGACACTGAAGAAGGAGAGGAACCCCAAGTACCCTCGCATCAGTGCTCCTCCCAGGAACAAGCTTGACCATTACCAGATT CTGAAGTTCCCACTCACTACCGAGTCTGCAATGAAGAAGATTGAGGACAACAACACCTTGGTTTTCATTGTTGACATCCGTGCTGATAAGAAGAAAATCA AAGATGCAGTGAAAAAGATGTACGACATCCAGGCCAAGAAAGTTAACACCTTGATCAGGCCGGATGGAACCAAGAAGGCTTATGTCAGGCTTACCCCGGA TTATGATGCTTTGGATGTTGCTAACAAGATTGGGATTATCTAG
AA sequence Show only first row Show all	>Lus10040316 pacid=23174226 polypeptide=Lus10040316 locus=Lus10040316.g ID=Lus10040316.BGIv1.0 annot-version=v1.0 MPEGYTVLDTQMIPENLVIIWRLKKPCTHFAADVTKKADPKAQATKAAKAVKSGPTFKRNPKKIRTKVTFHRPRTLKKERNPKYPRISAPPRNKLDHYQI LKFPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10040316 [exp]	0	1
AT2G35790			unknown protein		Lus10040379 [exp]	1.0	0.9177
AT1G02870			unknown protein		Lus10001459 [exp]	1.4	0.9140
AT3G22520			unknown protein		Lus10000233 [exp]	2.2	0.9027
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10003290 [exp]	2.4	0.9120
AT4G01560		MEE49	maternal effect embryo arrest ...		Lus10007860 [exp]	5.1	0.8804
AT2G40510			Ribosomal protein S26e family ...		Lus10029042 [exp]	5.3	0.8935
AT3G25150			Nuclear transport factor 2 (NT...		Lus10003144 [exp]	6.0	0.8857
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Lus10031786 [exp]	6.6	0.9032
AT2G19640		SDG39, ASHR2	SET DOMAIN PROTEIN 39, ASH1-re...		Lus10026687 [exp]	6.9	0.8868
AT1G13030			sphere organelles protein-rela...		Lus10036876 [exp]	9.2	0.8970

Compare expression of checked genes

Lus10040316 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.