Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39450 576 / 0 ATMTP11 Cation efflux family protein (.1) AT1G79520 460 / 9e-162 Cation efflux family protein (.1.2) AT1G16310 461 / 1e-161 Cation efflux family protein (.1) AT3G58060 347 / 3e-117 Cation efflux family protein (.1) AT2G47830 58 / 6e-09 Cation efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023439 [exp] 739 / 0 AT2G39450 585 / 0.0 Cation efflux family protein (.1) Lus10001768 [exp] 420 / 1e-144 AT1G16310 521 / 0.0 Cation efflux family protein (.1) Lus10009598 [exp] 414 / 2e-143 AT1G16310 518 / 0.0 Cation efflux family protein (.1) Lus10029304 [exp] 361 / 1e-122 AT3G58060 577 / 0.0 Cation efflux family protein (.1) Lus10016239 [exp] 359 / 5e-122 AT3G58060 574 / 0.0 Cation efflux family protein (.1) Lus10000061 [exp] 123 / 5e-33 AT1G16310 165 / 6e-49 Cation efflux family protein (.1) Lus10016242 [exp] 82 / 3e-19 AT3G58060 119 / 1e-33 Cation efflux family protein (.1) Lus10040922 [exp] 56 / 4e-08 AT2G47830 545 / 0.0 Cation efflux family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G049600 [exp] 649 / 0 AT2G39450 595 / 0.0 Cation efflux family protein (.1) Potri.010G211300 [exp] 646 / 0 AT2G39450 598 / 0.0 Cation efflux family protein (.1) Potri.010G172900 [exp] 446 / 6e-156 AT1G16310 572 / 0.0 Cation efflux family protein (.1) Potri.010G172800 [exp] 444 / 1e-155 AT1G16310 585 / 0.0 Cation efflux family protein (.1) Potri.010G172700 [exp] 429 / 1e-149 AT1G16310 545 / 0.0 Cation efflux family protein (.1) Potri.008G083600 [exp] 412 / 6e-143 AT1G16310 521 / 0.0 Cation efflux family protein (.1) Potri.010G172600 [exp] 392 / 4e-135 AT1G16310 504 / 2e-178 Cation efflux family protein (.1) Potri.003G215600 [exp] 344 / 3e-116 AT3G58060 521 / 0.0 Cation efflux family protein (.1) Potri.001G010300 [exp] 341 / 4e-115 AT3G58060 479 / 4e-169 Cation efflux family protein (.1) Potri.001G010200 [exp] 338 / 5e-114 AT3G58060 540 / 0.0 Cation efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01545 [flax] [poplar] Cation_efflux Cation efflux family
Representative CDS sequence Show only first row Show all	>Lus10040318 pacid=23174003 polypeptide=Lus10040318 locus=Lus10040318.g ID=Lus10040318.BGIv1.0 annot-version=v1.0 ATGGCGGAGCACGGTGGTGGTGGCTTACAAGAGGAAGGGCTTTCCCTCCTGAACCTCGAAAGCAATGGCGTCGACCGCTCATGGCGGCTGAACTTCGACG GGTACCAGTTGACGTCAGAGCAGAAAGAGATAAAGCCCCGTGGAATCCACGATTGCTGTCCTGGTGTTACAGGTCCAGAAGATCATGTTGCGGTGTACTA TCAGCAGCAGGTAGAAATGCTTGAGGGTTTCACTGAAATGGATGCCTTAGCAGACCGTGGATTTATCCCTGGAATGACCAAGGAAGAGGAAGAAAAGCTG GCTAAAAGTGAGACATTTGCCATTAGAATCTCCAACGCTGCCAATCTGGTTCTTTTTGCTGCAAAGGTCTATGCCTCAGTCAGAAGTGGCTCGTTGGCCA TCATTGCATCTACATTGGACTCTCTCCTTGATCTTCTTTCGGGATTCATCCTCTGGTTTACTGCATTCTCCATGCAAACTCCAAACCCTTATCAATACCC AATTGGCAAAAAGCGCATGCAACCGCTGGGAATTCTCGTGTTTGCATCTGTAATGGCGACTCTAGGACTGCAGATCATCTTGGAATCAGCCCGTACATTA ATATCTGATGATAAAGCATTCGGTCTGACCAAAGATCAAGAACGTTGGGTTGTGGGCATAATGCTCTCAGTAACCGTCGTCAAACTGCTTCTGATGATTT ATTGCCGCACATTCACCAATGAGATCATCAAGGCTTACGCCCAGGATCACTTCTTCGATGTGGTGACCAACTTCATCGGCCTTTTCGCCGCGCTTCTTGC TAATTACGTCGACGATTGGATGGACCCCGTCGGAGCCATAATTCTGGCGTTGTACACGATTCGTACGTGGTCAATGACGGTGCTCGAGAATGTGCACTCG CTCGTTGGCAAATCGGCAACTCCAGACTATCTCCAGAAACTGACTTACCTCTCGTGGAACCATCACAAAGCCATCAGACATATCGACACAGTCCGAGCTT ACACGTTCGGTTCGCACTACTTTGTGGAGGTTGACATCGTGTTGCCTGCAGATATGCCACTGCAGGAGGCTCACGATATTGGGGAGTCCCTGCAGGAGAA GCTGGAACTGCTCCCCGAGATAGAGAGAGCTTTCGTTCATCTCGATTACGAGTACAGCCACAAACCGGAACACGCTCAATCGTAA
AA sequence Show only first row Show all	>Lus10040318 pacid=23174003 polypeptide=Lus10040318 locus=Lus10040318.g ID=Lus10040318.BGIv1.0 annot-version=v1.0 MAEHGGGGLQEEGLSLLNLESNGVDRSWRLNFDGYQLTSEQKEIKPRGIHDCCPGVTGPEDHVAVYYQQQVEMLEGFTEMDALADRGFIPGMTKEEEEKL AKSETFAIRISNAANLVLFAAKVYASVRSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESARTL ISDDKAFGLTKDQERWVVGIMLSVTVVKLLLMIYCRTFTNEIIKAYAQDHFFDVVTNFIGLFAALLANYVDDWMDPVGAIILALYTIRTWSMTVLENVHS LVGKSATPDYLQKLTYLSWNHHKAIRHIDTVRAYTFGSHYFVEVDIVLPADMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEYSHKPEHAQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39450		ATMTP11	Cation efflux family protein (...		Lus10040318 [exp]	0	1
AT5G52450			MATE efflux family protein (.1...		Lus10029668 [exp]	1.4	0.9226
					Lus10022598 [exp]	1.7	0.9226
AT4G03230			S-locus lectin protein kinase ...		Lus10031592 [exp]	2.4	0.9169
AT5G49690			UDP-Glycosyltransferase superf...		Lus10028865 [exp]	4.2	0.8935
AT5G37660		PDLP7	plasmodesmata-located protein ...		Lus10020814 [exp]	6.9	0.9132
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10014427 [exp]	7.3	0.8870
AT2G23200			Protein kinase superfamily pro...		Lus10012101 [exp]	9.6	0.8600
					Lus10003132 [exp]	9.9	0.8927
AT1G28280			VQ motif-containing protein (....		Lus10041929 [exp]	10.7	0.8999
AT1G55110	C2H2ZnF	ARABIDOPSISTHAL...	indeterminate(ID)-domain 7 (.1...		Lus10029904 [exp]	11.0	0.8815

Compare expression of checked genes

Lus10040318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.