Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75270 313 / 3e-105 DHAR2 dehydroascorbate reductase 2 (.1) AT1G19570 298 / 8e-100 DHAR5, DHAR1, ATDHAR1 DEHYDROASCORBATE REDUCTASE 5, dehydroascorbate reductase (.1.2) AT5G16710 280 / 7e-92 DHAR3 dehydroascorbate reductase 1 (.1) AT1G19550 190 / 2e-58 Glutathione S-transferase family protein (.1) AT5G02790 55 / 2e-08 GSTL3 Glutathione transferase L3, Glutathione S-transferase family protein (.1) AT5G02780 52 / 2e-07 GSTL1 glutathione transferase lambda 1 (.1.2) AT1G78370 51 / 5e-07 ATGSTU20 glutathione S-transferase TAU 20 (.1) AT1G17180 48 / 5e-06 ATGSTU25 glutathione S-transferase TAU 25 (.1) AT1G78320 47 / 8e-06 ATGSTU23 glutathione S-transferase TAU 23 (.1) AT2G02390 47 / 1e-05 GST18, ATGSTZ1 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023442 [exp] 413 / 8e-145 AT1G75270 317 / 5e-111 dehydroascorbate reductase 2 (.1) Lus10023441 [exp] 395 / 8e-138 AT1G75270 327 / 3e-115 dehydroascorbate reductase 2 (.1) Lus10009135 [exp] 263 / 6e-84 AT5G16710 372 / 5e-130 dehydroascorbate reductase 1 (.1) Lus10028510 [exp] 255 / 1e-79 AT5G16710 352 / 2e-120 dehydroascorbate reductase 1 (.1) Lus10021103 [exp] 56 / 1e-08 AT3G09270 250 / 1e-84 glutathione S-transferase TAU 8 (.1) Lus10042469 [exp] 54 / 4e-08 AT1G78380 284 / 5e-98 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10019895 [exp] 54 / 2e-07 AT5G12130 399 / 6e-135 PIGMENT DEFECTIVE 149, TELLURITE RESISTANCE C, integral membrane TerC family protein (.1) Lus10019480 [exp] 52 / 2e-07 AT1G17180 231 / 6e-77 glutathione S-transferase TAU 25 (.1) Lus10026198 [exp] 52 / 4e-07 AT1G78380 295 / 3e-102 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G049300 [exp] 312 / 4e-105 AT1G75270 340 / 2e-120 dehydroascorbate reductase 2 (.1) Potri.017G125100 [exp] 277 / 2e-90 AT5G16710 389 / 4e-138 dehydroascorbate reductase 1 (.1) Potri.010G211600 [exp] 257 / 3e-84 AT1G75270 253 / 5e-87 dehydroascorbate reductase 2 (.1) Potri.004G080400 [exp] 61 / 3e-10 AT1G78380 231 / 5e-77 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G140800 [exp] 61 / 3e-10 AT1G78380 318 / 1e-111 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.010G061200 [exp] 58 / 2e-09 AT3G09270 202 / 8e-66 glutathione S-transferase TAU 8 (.1) Potri.008G046800 [exp] 59 / 3e-09 AT3G55040 318 / 4e-109 glutathione transferase lambda 2 (.1) Potri.001G436600 [exp] 56 / 8e-09 AT1G78380 318 / 2e-111 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G436500 [exp] 56 / 9e-09 AT1G78380 303 / 2e-105 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G112900 [exp] 56 / 9e-09 AT1G17180 271 / 1e-92 glutathione S-transferase TAU 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10040320 pacid=23173972 polypeptide=Lus10040320 locus=Lus10040320.g ID=Lus10040320.BGIv1.0 annot-version=v1.0 ATGGCATTGAAGCTGGAGATCGCTGTGAAGGGTGCTGTGGGTGCCCCACATCTTCAAGGAGACTGTCCATTTTCCCAGAGAGTTCAGTTGACATTGGAAG AGAAGAATGTTCCTTACAACCCACATTTCATCAATATCGCTGATAAACCAAAGTGGTTCTTGGAGATCAACCCTGGAGGCAAAGTTCCAGTGGTGAAATT TGATGAGAAATGGGTGTCTGATTCTGATGTCATTGTTGGAATACTGGAGGAGAAATATCCTGAACCCTCTCTGGTCACGCCTCCTGAATTTGCCTCTGTG GGTTCGAAGATCTTCGATTCGTTCGTCAACTTCTTGAAGAGCAAGGACTCAAGTGATGGAACAGAAGAGGCTTTGGTTAATCAGCTGAAGGCACTTAATG AGCATCTCAAGACATATAGTCCCTTCATTGCTGGAGAGAAGATCAGTGCTGTTGATTTGAGCTTGGCTCCAAAACTGTACCATCTGGAGACTGCTCTTGC CCATTTCAAGAAGTGGAGCATTCCTGAAGAACTGACTCATGTCCACAGTTACTTGAAGGCATTGTTCTCCCGTGAGTCGTTTCAGAAGACCAAGGCTGAG AAGCAGTATGTCATTGCTGGATGGGCACCCAAGAAAACTCGAGTGAACAAAAAGGATATGGCCGTGGAGATCGCAGTGAAGGCAGCCGCTGGTGCACCAG ATCTTCAAGGGGACTGTCCGTTTTGCCAGAGAGTTCAGTTGACATTAGAAGAGAAGAAGGTTGCTTACAAGCTGCATCTAGTCAATCTCAGTGATAAACC CCAGTGGTTTCTGGACATAAGCCCTGAAGGGAAGGTTCCAGTGGTGAAATTTGATGACAAATGGGTTGCTGATTCCGATGTCATTGTTGGGATATTAGAG GAGAAATATCCTGAACCGTCTCTTGTCACTCCTGATGAATTTTCCTCTGTGGGTTCGAAGATCTTCATATCGTTTATCAACTTCCTGAAGAGCAAGGACT TGAGTGATGGCACAGAGCAGGCTTTGGTTGAGCAGCTGAAGGCACTTGATGAGCATCTCAAGGCACATGGTCCCTTTATTGCAGGGGAGAAGATAACCGG TGTCGATTTGAGCTTGGCTCCGAAACTGTATCATCTGGAGACAGCTCTTGGCCATTTCAAGAAGTGGAGTATTCCTCAAGACTTGACTCATGTGCACAGT TACTTGAAGACATTGTTCACCCGCGAGTCCTTTGAGAAGACCAGGCCTGAGAAGGAATATGTGATTGCTGGTTGGGCACCAAAGGATGCTAATTATGAGT TTGTAGATGAAGACGCCGACACCAGCAATTGCTTTATCTTCTGGCCCGAACCCAATAATTACATTCATGCCAGCTTCAGGGCTAAGATGGCAGATGATGG TCCTGGCAAAAGCAAGTTGTTCTTTGCCGAGGCAACTTTCAGAAAAGATCGGTTGGGGGATTGA
AA sequence Show only first row Show all	>Lus10040320 pacid=23173972 polypeptide=Lus10040320 locus=Lus10040320.g ID=Lus10040320.BGIv1.0 annot-version=v1.0 MALKLEIAVKGAVGAPHLQGDCPFSQRVQLTLEEKNVPYNPHFINIADKPKWFLEINPGGKVPVVKFDEKWVSDSDVIVGILEEKYPEPSLVTPPEFASV GSKIFDSFVNFLKSKDSSDGTEEALVNQLKALNEHLKTYSPFIAGEKISAVDLSLAPKLYHLETALAHFKKWSIPEELTHVHSYLKALFSRESFQKTKAE KQYVIAGWAPKKTRVNKKDMAVEIAVKAAAGAPDLQGDCPFCQRVQLTLEEKKVAYKLHLVNLSDKPQWFLDISPEGKVPVVKFDDKWVADSDVIVGILE EKYPEPSLVTPDEFSSVGSKIFISFINFLKSKDLSDGTEQALVEQLKALDEHLKAHGPFIAGEKITGVDLSLAPKLYHLETALGHFKKWSIPQDLTHVHS YLKTLFTRESFEKTRPEKEYVIAGWAPKDANYEFVDEDADTSNCFIFWPEPNNYIHASFRAKMADDGPGKSKLFFAEATFRKDRLGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75270		DHAR2	dehydroascorbate reductase 2 (...		Lus10040320 [exp]	0	1
AT5G65360			Histone superfamily protein (....		Lus10012744 [exp]	9.6	0.8700
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10016156 [exp]	13.1	0.8348
AT1G75270		DHAR2	dehydroascorbate reductase 2 (...		Lus10023442 [exp]	17.5	0.8084
AT3G27360			Histone superfamily protein (....		Lus10031821 [exp]	19.2	0.8371
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10016695 [exp]	21.1	0.8283
AT1G09200			Histone superfamily protein (....		Lus10031250 [exp]	23.2	0.8356
AT4G18425			Protein of unknown function (D...		Lus10013975 [exp]	27.0	0.8310
AT4G16807			unknown protein		Lus10010995 [exp]	32.3	0.8154
AT5G40460			unknown protein		Lus10022268 [exp]	32.5	0.7224
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10033237 [exp]	39.6	0.8131

Compare expression of checked genes

Lus10040320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.