Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33530 247 / 2e-79 SCPL46 serine carboxypeptidase-like 46 (.1) AT1G28110 239 / 2e-76 SCPL45 serine carboxypeptidase-like 45 (.1.2) AT2G12480 175 / 7e-52 SCPL43 serine carboxypeptidase-like 43 (.1.2) AT1G43780 174 / 2e-51 SCPL44 serine carboxypeptidase-like 44 (.1) AT5G42240 173 / 6e-51 SCPL42 serine carboxypeptidase-like 42 (.1) AT5G42230 166 / 3e-48 SCPL41 serine carboxypeptidase-like 41 (.1) AT4G30610 162 / 8e-47 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT1G61130 162 / 1e-46 SCPL32 serine carboxypeptidase-like 32 (.1) AT1G11080 162 / 2e-46 SCPL31 serine carboxypeptidase-like 31 (.1.2) AT2G24000 161 / 2e-46 SCPL22 serine carboxypeptidase-like 22 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040324 [exp] 406 / 1e-141 AT2G33530 532 / 0.0 serine carboxypeptidase-like 46 (.1) Lus10013395 [exp] 397 / 3e-138 AT1G28110 534 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10021856 [exp] 396 / 2e-137 AT1G28110 525 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10010331 [exp] 394 / 5e-137 AT1G28110 540 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10040326 [exp] 393 / 8e-137 AT2G33530 436 / 2e-150 serine carboxypeptidase-like 46 (.1) Lus10023447 [exp] 369 / 6e-127 AT2G33530 441 / 2e-152 serine carboxypeptidase-like 46 (.1) Lus10023446 [exp] 366 / 8e-126 AT1G28110 520 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10030317 [exp] 322 / 1e-108 AT1G28110 501 / 2e-175 serine carboxypeptidase-like 45 (.1.2) Lus10003302 [exp] 320 / 7e-108 AT1G28110 498 / 2e-174 serine carboxypeptidase-like 45 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G034400 [exp] 305 / 8e-102 AT1G28110 566 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034600 [exp] 298 / 5e-99 AT1G28110 563 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036000 [exp] 298 / 5e-99 AT1G28110 548 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036400 [exp] 285 / 5e-94 AT2G33530 547 / 0.0 serine carboxypeptidase-like 46 (.1) Potri.006G036500 [exp] 280 / 1e-92 AT1G28110 619 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.003G164000 [exp] 246 / 3e-79 AT1G28110 758 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.001G065900 [exp] 244 / 2e-78 AT1G28110 766 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.012G105500 [exp] 242 / 1e-77 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.015G104700 [exp] 235 / 7e-75 AT1G28110 715 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.002G071800 [exp] 169 / 2e-49 AT5G42240 742 / 0.0 serine carboxypeptidase-like 42 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10040323 pacid=23173920 polypeptide=Lus10040323 locus=Lus10040323.g ID=Lus10040323.BGIv1.0 annot-version=v1.0 ATGGGTTCTCAGTTATGGATTGTTATGTTCATCATTTCAGCAGATCTGGGCTCGAATTCCGGAACAGTTGAGTCGTCACATGAAGCTGACAGGATTGCAA AGTTGCCAGGTCAGCCCGATGTTAGCTTCCAGCCGTATGCAGGACCTGGTTGTTCTTCGGTTGGAGCTGGAGCTTTCTCCGAGCACGGTCCTTTCCAGCC AAATGCTTCCGGTGTTCTGTTCAACAACGACTACAGTTGGAACAAAGAAGCAAACATGTTGTACTTGGAATCTCCAGCAGGAGTTGGATTCTCCCATTCA GCCAACGCCTCTTTCTATAAATTGGTTAATGACACCATAACAGCAAAAGAGAACTTGGTGTTCCTACAACAATGGCTACTTAAGTTTCCTGAGTACAAAA GCAGAGATCTTTTCCTCACTGGAGAGAGCCATGTTGGACACTATGTGCCACAGCTAGCCCAGCTAATTGTGGATTCAGGAGCAAATCTCAGCTTGAAAGG CATAGCTATATGGAACCCGGTGTTCAGCACGGATATCAACAGCCAAGGGAAATTCTACTGGTCACATGGATTGATCTCAGATAAAACGTATCACCTTGTC AACACAATGTGCAACACATCACAGCTGTGGAGAGAATCCATGTCGGGCAATCTTTCTAAACAGTGTAGTATCGTTGCAGTTTTGATAATTCCTGGCCATT CATTCGATGCATATGATGTCACTTTAGATGTTTGTCCGGAAGATATGAAATCAAACCTGTGGTTCCCTGAAATTACATCCATATTCGCGCCTTAA
AA sequence Show only first row Show all	>Lus10040323 pacid=23173920 polypeptide=Lus10040323 locus=Lus10040323.g ID=Lus10040323.BGIv1.0 annot-version=v1.0 MGSQLWIVMFIISADLGSNSGTVESSHEADRIAKLPGQPDVSFQPYAGPGCSSVGAGAFSEHGPFQPNASGVLFNNDYSWNKEANMLYLESPAGVGFSHS ANASFYKLVNDTITAKENLVFLQQWLLKFPEYKSRDLFLTGESHVGHYVPQLAQLIVDSGANLSLKGIAIWNPVFSTDINSQGKFYWSHGLISDKTYHLV NTMCNTSQLWRESMSGNLSKQCSIVAVLIIPGHSFDAYDVTLDVCPEDMKSNLWFPEITSIFAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040323 [exp]	0	1
					Lus10022880 [exp]	10.6	0.7259
AT4G30220		RUXF	small nuclear ribonucleoprotei...		Lus10037606 [exp]	22.0	0.7070
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10039050 [exp]	23.7	0.6474
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10040322 [exp]	31.3	0.6361
AT5G53110			RING/U-box superfamily protein...		Lus10025491 [exp]	33.1	0.6620
AT5G39210		CRR7	chlororespiratory reduction 7 ...		Lus10032982 [exp]	38.3	0.6756
AT5G01910			unknown protein		Lus10025130 [exp]	48.4	0.5815
					Lus10031558 [exp]	50.4	0.5875
AT1G74240			Mitochondrial substrate carrie...		Lus10017849 [exp]	52.7	0.6606
AT4G30820			cyclin-dependent kinase-activa...		Lus10022901 [exp]	61.4	0.6290

Compare expression of checked genes

Lus10040323 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.