Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33530 532 / 0 SCPL46 serine carboxypeptidase-like 46 (.1) AT1G28110 530 / 0 SCPL45 serine carboxypeptidase-like 45 (.1.2) AT1G43780 387 / 1e-130 SCPL44 serine carboxypeptidase-like 44 (.1) AT5G42240 374 / 1e-125 SCPL42 serine carboxypeptidase-like 42 (.1) AT5G42230 369 / 6e-124 SCPL41 serine carboxypeptidase-like 41 (.1) AT4G30610 351 / 8e-117 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT3G02110 345 / 1e-114 SCPL25 serine carboxypeptidase-like 25 (.1) AT2G12480 340 / 1e-112 SCPL43 serine carboxypeptidase-like 43 (.1.2) AT5G23210 335 / 2e-110 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT1G61130 332 / 1e-109 SCPL32 serine carboxypeptidase-like 32 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010331 [exp] 826 / 0 AT1G28110 540 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10021856 [exp] 820 / 0 AT1G28110 525 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10013395 [exp] 806 / 0 AT1G28110 534 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10023446 [exp] 772 / 0 AT1G28110 520 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10040326 [exp] 688 / 0 AT2G33530 436 / 2e-150 serine carboxypeptidase-like 46 (.1) Lus10023447 [exp] 683 / 0 AT2G33530 441 / 2e-152 serine carboxypeptidase-like 46 (.1) Lus10003302 [exp] 646 / 0 AT1G28110 498 / 2e-174 serine carboxypeptidase-like 45 (.1.2) Lus10030317 [exp] 645 / 0 AT1G28110 501 / 2e-175 serine carboxypeptidase-like 45 (.1.2) Lus10030315 [exp] 624 / 0 AT1G28110 476 / 3e-161 serine carboxypeptidase-like 45 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G034400 [exp] 639 / 0 AT1G28110 566 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034600 [exp] 637 / 0 AT1G28110 563 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036000 [exp] 624 / 0 AT1G28110 548 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036500 [exp] 575 / 0 AT1G28110 619 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036400 [exp] 564 / 0 AT2G33530 547 / 0.0 serine carboxypeptidase-like 46 (.1) Potri.012G105500 [exp] 531 / 0 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.003G164000 [exp] 530 / 0 AT1G28110 758 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.001G065900 [exp] 525 / 0 AT1G28110 766 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.015G104700 [exp] 499 / 5e-175 AT1G28110 715 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.002G071800 [exp] 375 / 5e-126 AT5G42240 742 / 0.0 serine carboxypeptidase-like 42 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10040324 pacid=23174162 polypeptide=Lus10040324 locus=Lus10040324.g ID=Lus10040324.BGIv1.0 annot-version=v1.0 ATGGATTCTCAGTTATGGATTGTCATGTTCATGATTTCAGCAGCTCTTGCCTCGAATTTCGGAACAGTTGACTCGTCATATCAGGCTGACAAGATAGTGA AGTTGCCAGGACAGCCAGAGGTTAGCTTTCAGCAGTATGCAGGCTATGTGACTGTTGACGAAATCCAGCAGAGGAAACTTTTCTACTACTTTGCTGAAGC TCAGACCAATCCAATTTCCAAGCCACTTGTTCTCTGGCTCAATGGAGGACCTGGTTGCTCTTCGGTTGGAGATGGAGCTTTCTCCGAGCACGGTCCTTTC AGACCAAATGCTTCCGGAGCTCTGGTCAACAACTACTACAGTTGGAACAAAGAAGCAAACATGCTGTACTTGGAATCTCCAGCAGGAGTTGGATTCTCCT ATTCAGCCAACACCTATTTCTATAAACTGGTTAATGACACCATAACAGCGAAAGACAACTTGGTGTTCTTACAACAGTGGCTACTCAAGTTTCCTGAGTA CAAAAGCAGAGATCTTTTCATCACTGGAGAGAGCTATGCTGGACACTATGTGCCACAGCTAGCGCAGCTAATTGTGGATTCCAAAGCAAATCTCAGTTTG AAGGGCATAGCTATAGGAAACCCGCTGTTGGAGTTCGACACGGATATCAACAGCCAAGGGAAGTTCTACTGGTCGCATGGATTGATTTCGGACAAAACCT ATCACCTTGTCAATACAATGTGCAACACATCACAGCTGTGGAGAGAATACAGGAATCTTTCTAAACAGTGCAGTATAGTTTCAGCGCGAATAGATAAAGA AATTCCTGGCCATTCATTCAATCAGTATGATGTCACTTCGGATGTTTGTCTATCAGATAAGAAGTCAAACTTCGGTTCCCTGAAACTACGCCAACTTTCG CCTCTCAAGTCCAGGCAAGGCCGACTCAGAAAGCTGAAAGCAGGGCAGTCCATAGATCTTTGCGTAGAAGACGAGACGGACAAGTACTTGAACAGGAAAG ATGTTCAACAAGCGATGCACGCTCAGCTTGTTGGTGTGTCCGGTTGGACTTTCTGCAGCGGTGTGATGAACTATGACTATAGAAACTCTGAGATCCCGAC GATCGGAGTTGTGGGTTCATTGGTGAGTTCAGGGATCCGAGTTCTGGTCTACAGCGGGGATCAAGACTCTGTGATTCCATTCATCGGAACAAGGACTCTG GTGAACCGCTTGGCTAAAGGAATGGGATTGAACACAACGGTTTCGTACAAGCCATGGTTCGACACTGATAAACAAGTTGGTGGATGGACAGAAGTTTACG GGGAGAAGAAGCAGCTGGGATTCGCAACCATTAGAGGAGCATCTCACTTGGCTCCATTCTCCTCTCCCCAGAGATCGCTCGCTTTGTTCGCTGCATTCAT TGCCGGGAAACCATTGGCTGTTTGA
AA sequence Show only first row Show all	>Lus10040324 pacid=23174162 polypeptide=Lus10040324 locus=Lus10040324.g ID=Lus10040324.BGIv1.0 annot-version=v1.0 MDSQLWIVMFMISAALASNFGTVDSSYQADKIVKLPGQPEVSFQQYAGYVTVDEIQQRKLFYYFAEAQTNPISKPLVLWLNGGPGCSSVGDGAFSEHGPF RPNASGALVNNYYSWNKEANMLYLESPAGVGFSYSANTYFYKLVNDTITAKDNLVFLQQWLLKFPEYKSRDLFITGESYAGHYVPQLAQLIVDSKANLSL KGIAIGNPLLEFDTDINSQGKFYWSHGLISDKTYHLVNTMCNTSQLWREYRNLSKQCSIVSARIDKEIPGHSFNQYDVTSDVCLSDKKSNFGSLKLRQLS PLKSRQGRLRKLKAGQSIDLCVEDETDKYLNRKDVQQAMHAQLVGVSGWTFCSGVMNYDYRNSEIPTIGVVGSLVSSGIRVLVYSGDQDSVIPFIGTRTL VNRLAKGMGLNTTVSYKPWFDTDKQVGGWTEVYGEKKQLGFATIRGASHLAPFSSPQRSLALFAAFIAGKPLAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040324 [exp]	0	1
AT3G05610			Plant invertase/pectin methyle...		Lus10033466 [exp]	2.0	0.9573
AT1G07520	GRAS		GRAS family transcription fact...		Lus10037757 [exp]	3.7	0.9405
AT1G74220			unknown protein		Lus10040518 [exp]	7.3	0.9471
AT4G32110			Beta-1,3-N-Acetylglucosaminylt...		Lus10042384 [exp]	10.1	0.9408
AT5G26330			Cupredoxin superfamily protein...		Lus10006683 [exp]	10.6	0.9134
					Lus10006761 [exp]	11.0	0.9154
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10034790 [exp]	12.7	0.9334
AT1G21850		SKS8	SKU5 similar 8 (.1)		Lus10022648 [exp]	12.9	0.9521
AT3G19550			unknown protein		Lus10013901 [exp]	13.6	0.9353
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10039087 [exp]	14.5	0.9294

Compare expression of checked genes

Lus10040324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.