Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G33340 392 / 6e-134 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT1G64830 388 / 2e-132 Eukaryotic aspartyl protease family protein (.1) AT2G35615 315 / 3e-103 Eukaryotic aspartyl protease family protein (.1) AT1G31450 290 / 8e-94 Eukaryotic aspartyl protease family protein (.1) AT2G28010 229 / 1e-70 Eukaryotic aspartyl protease family protein (.1) AT2G28030 224 / 4e-69 Eukaryotic aspartyl protease family protein (.1) AT2G28040 220 / 2e-67 Eukaryotic aspartyl protease family protein (.1) AT2G03200 211 / 5e-63 Eukaryotic aspartyl protease family protein (.1) AT1G01300 199 / 1e-58 Eukaryotic aspartyl protease family protein (.1) AT2G28220 202 / 1e-57 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023445 [exp] 726 / 0 AT5G33340 448 / 9e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10041151 [exp] 666 / 0 AT5G33340 445 / 1e-154 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10041150 [exp] 570 / 0 AT5G33340 399 / 2e-137 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024903 [exp] 560 / 0 AT5G33340 449 / 3e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024910 [exp] 550 / 0 AT5G33340 452 / 2e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10022912 [exp] 549 / 0 AT5G33340 450 / 1e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10002613 [exp] 454 / 1e-157 AT5G33340 406 / 4e-139 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10018825 [exp] 433 / 1e-149 AT5G33340 432 / 1e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10002611 [exp] 418 / 1e-143 AT5G33340 392 / 9e-134 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G114400 [exp] 382 / 7e-130 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G087900 [exp] 362 / 4e-122 AT5G33340 430 / 8e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G105300 [exp] 314 / 4e-103 AT2G35615 414 / 2e-142 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 209 / 1e-62 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 206 / 2e-61 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 199 / 2e-58 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 190 / 6e-55 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 180 / 5e-51 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 176 / 2e-49 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G128200 [exp] 169 / 5e-47 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10040325 pacid=23173808 polypeptide=Lus10040325 locus=Lus10040325.g ID=Lus10040325.BGIv1.0 annot-version=v1.0 ATGACGACACTGATCCATCTCGCATTTTCGCTAGCTACATTCATGTGCATCGTTTCGACACTGGTGAAGGCTCAGAGCAGTAAGGGGTTCAGTATGGATT TAGTCCACCGCGATTCATCCGATTCCCCTTTCTACAACCCTGAGGAGACGCCGGCTCAAAGAGTCAATAATGCTGCTAGGCGATCCGTGGCTAGAGTCCA TCGCTTCAGCAACATCATTCATCATAGTATTGGTTCTTCTTCTAGTTCCAAGTCGGACGATCCCAATGCTTTGTTAACAGCTAATAACGGCGAGTACTTG GTCAATATCTCTCTTGGCACGCCACCGTTCCCTATTGTGGCCATTGCTGATACAGGCAGCGACATCATATGGACGCAATGCAAGCCATGTACCAATTGTT ACAAGCAGGACACTCCAGTGTTTGACCCCAAATCCTCCACTACTTATAGAACGGTAGCTTGTTCTTCGAACGCTTGTAATTCCCTCCAAAGTGAAGGAAG TTCGTGCTCTTCGAATGGACAAGTTTGCCAATATCAAGTGAGTTATGGGGATCAATCCCATACCCAGGGAGATGTAGCATCTGAAACACTCACACTAGGC TCCACAACTGGTCGTCTCGTGGCACTTCCCAAGACAGTGATTGGTTGTGGGCACGACAACGCTGGAACCTTTGACCCGAAAGGTTCTGGTATCGTTGGAC TTGGAGGCGGCTCTGCTTCCCTAGTTTCCCAACTTGGCTCTTCCATTGCCGGAAAATTCTCTTACTGTCTAGTCCCATACACTTCTACCAACCCCACCAG TACTATGCACTTCGGCACAAACGCCATTGTATCAGGTAGCAATGTTGTGTCCACTCTCTTGATTTCCGATCCATCTGAACCCACTTTTTACTTCCTTCAA CTCGAAGCCATCAGTGTTGGGAGGAAGAAGATCCCTTTCCAAACTTCATCCATCGGAAGTTCCGGCGGGAACATTATAATCGACTCCGGGACCACGCTAA CCCTTGTGCCTAGTCATGTTTTTTCACAGCTATCTGATGCCGTGGAGAGTCAGGTTAGTGGCGGAACCAAGGCGAGCGACCCGCAAGGTTTTTTCAGCCT GTGTTACGTTGTAGACTCGAATATCAAAGTCCCTCTCATGACAGCGCATTTCAAAGGAGCCGATTTAGCTATGACATCAAGCAACATCTTCATCCATGTC ACTGAAAAGATTATGTGTTTGGCCTTCTACGCTAACGATGAGTTAAGCATATACGGAAACGTTGCGCAGCAAAACTTCTTAATCGGCTATGACCTTCAAA AGCACACTCTCTCCTTCAAGCCTACTGATTGCTCTAAGACTACTTAG
AA sequence Show only first row Show all	>Lus10040325 pacid=23173808 polypeptide=Lus10040325 locus=Lus10040325.g ID=Lus10040325.BGIv1.0 annot-version=v1.0 MTTLIHLAFSLATFMCIVSTLVKAQSSKGFSMDLVHRDSSDSPFYNPEETPAQRVNNAARRSVARVHRFSNIIHHSIGSSSSSKSDDPNALLTANNGEYL VNISLGTPPFPIVAIADTGSDIIWTQCKPCTNCYKQDTPVFDPKSSTTYRTVACSSNACNSLQSEGSSCSSNGQVCQYQVSYGDQSHTQGDVASETLTLG STTGRLVALPKTVIGCGHDNAGTFDPKGSGIVGLGGGSASLVSQLGSSIAGKFSYCLVPYTSTNPTSTMHFGTNAIVSGSNVVSTLLISDPSEPTFYFLQ LEAISVGRKKIPFQTSSIGSSGGNIIIDSGTTLTLVPSHVFSQLSDAVESQVSGGTKASDPQGFFSLCYVVDSNIKVPLMTAHFKGADLAMTSSNIFIHV TEKIMCLAFYANDELSIYGNVAQQNFLIGYDLQKHTLSFKPTDCSKTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10040325 [exp]	0	1
AT1G22370		ATUGT85A5	UDP-glucosyl transferase 85A5 ...		Lus10015747 [exp]	4.6	0.8441
AT2G34440	MADS	AGL29	AGAMOUS-like 29 (.1)		Lus10011787 [exp]	4.7	0.9222
AT3G13690			Protein kinase protein with ad...		Lus10009559 [exp]	7.3	0.9040
					Lus10021285 [exp]	8.4	0.7713
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10041976 [exp]	9.3	0.8882
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10031172 [exp]	10.0	0.8378
					Lus10003825 [exp]	11.0	0.8772
AT1G30840		ATPUP4	purine permease 4 (.1.2)		Lus10008073 [exp]	11.5	0.7885
AT5G56990			unknown protein		Lus10029528 [exp]	12.2	0.8772
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10029635 [exp]	13.4	0.8772

Compare expression of checked genes

Lus10040325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.