Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33530 436 / 1e-150 SCPL46 serine carboxypeptidase-like 46 (.1) AT1G28110 432 / 4e-149 SCPL45 serine carboxypeptidase-like 45 (.1.2) AT1G43780 322 / 9e-106 SCPL44 serine carboxypeptidase-like 44 (.1) AT5G42240 315 / 2e-103 SCPL42 serine carboxypeptidase-like 42 (.1) AT5G42230 301 / 6e-98 SCPL41 serine carboxypeptidase-like 41 (.1) AT4G30610 284 / 3e-91 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT2G12480 282 / 9e-91 SCPL43 serine carboxypeptidase-like 43 (.1.2) AT2G24010 276 / 2e-88 SCPL23 serine carboxypeptidase-like 23 (.1) AT3G02110 276 / 4e-88 SCPL25 serine carboxypeptidase-like 25 (.1) AT5G23210 275 / 2e-87 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023447 [exp] 850 / 0 AT2G33530 441 / 2e-152 serine carboxypeptidase-like 46 (.1) Lus10023446 [exp] 752 / 0 AT1G28110 520 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10010331 [exp] 706 / 0 AT1G28110 540 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10021856 [exp] 693 / 0 AT1G28110 525 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10040324 [exp] 688 / 0 AT2G33530 532 / 0.0 serine carboxypeptidase-like 46 (.1) Lus10013395 [exp] 685 / 0 AT1G28110 534 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10003302 [exp] 564 / 0 AT1G28110 498 / 2e-174 serine carboxypeptidase-like 45 (.1.2) Lus10030317 [exp] 563 / 0 AT1G28110 501 / 2e-175 serine carboxypeptidase-like 45 (.1.2) Lus10023882 [exp] 550 / 0 AT1G48410 444 / 2e-146 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G036000 [exp] 559 / 0 AT1G28110 548 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034400 [exp] 551 / 0 AT1G28110 566 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034600 [exp] 551 / 0 AT1G28110 563 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036500 [exp] 495 / 1e-173 AT1G28110 619 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036400 [exp] 489 / 5e-171 AT2G33530 547 / 0.0 serine carboxypeptidase-like 46 (.1) Potri.012G105500 [exp] 455 / 5e-158 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.003G164000 [exp] 441 / 1e-152 AT1G28110 758 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.001G065900 [exp] 439 / 1e-151 AT1G28110 766 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.015G104700 [exp] 424 / 8e-146 AT1G28110 715 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.002G071800 [exp] 307 / 6e-100 AT5G42240 742 / 0.0 serine carboxypeptidase-like 42 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10040326 pacid=23173926 polypeptide=Lus10040326 locus=Lus10040326.g ID=Lus10040326.BGIv1.0 annot-version=v1.0 ATGGGTTCTCAGTTATGGATTGTCATGTTCATAATTTCTGCAGCTTTAGCCTTGAATTCCGGAACAGTCGAGTCGTCATATGAGGCTGACAAGATAGTGA AGTTGCCAGGTCAGCCAGATGTTAGCTTCCAGCAGTATGCAGGACCTGGTTGCTCTTCGGTTGGAGCTGGAGCTTTCTCCGAGCATGGTCCTTTCAAGCC AAATGCTAACGGAGGCCTTATCAACAATGACTACAGTTGGAACAATGAAGCAAACATGCTGTACTTGGAATCTCCAGCGGGAGTTGGATTCTCGTATTCA GGCAACACCTCTTTCTATAAATTGGTTAATGACACCATAACAGCAAACGACAACTTCGTGTTCCTACAACAATGGCTACTCAAGTTTCCTGAGTACAAGA CCAGAGATATTTTCATCACTGGAGAGAGCTATGCTGGACACTACGTGCCACAACTAGCCCAACTAATCGTCGAGTCAGGAGAAAATCTCAGCTTGAAAGG CATAGCTATAGGAAATCCATTGTTGGAGTTCAACACAGATCTGAACGGGCAAGGAGAATACTACTGGTCACATGGATTGATCTCGGACCATACATATGAC CTTGTGAACACAATCTGTAACATGTCACAGCTCCAGAGAGAAGGAATTGCAGACAATCTTTCGAAACCATGTAGCATCGTGCAAGCACGCTTCGATGAAG AGATTCCTCATCAACGTTCATTCAATGGGTATGATGTCACTTCTGATGTTTGTATATCAGCAGATGGTGCATCAAAGCTACAGTCTTTAGTTGCAAGTTT ACGTCCGTTTTCTACCTTGAAGTCCAAGCAAGGTCTTCTTGGGAAGCTGGATGCTGCAGGAGAAGAACACATAGACCTTTGTATACAGTCAAAGACGGAC AAGTATTTGAACAGGAAAGATGTTCAGCAAGCTCTGCATGCTAACCTTGTTGGTGTTACCACCTGGAGTTTCTGCAGCGATGTGGTGAATTATGACTACA ACAATCTTGAGATCCCAACAATCGGAGTGGTGGGTTCATTGGTGAGTTCAGGGATCCAAGTACTGATCTACAGTGGGGATCAAGATTCAGTGCTTCCATT CATTGGAACAAGAACTCTAGTGAACAATTTGGCCCAACAGATGATGCTCAACACAACTGTGCCTTACAAGCCATGGTTCGACACAGACAAACAGGTCGGT GGATGGACTCAAGTATATGGGGATGAGAAGAAGCAGTTGGGATTTGCAACCATTAGAGATGCATCTCACTTGGCTCCATTCTCGTCTCCGAAGAGGTCTC TCGCATTGTTCTCTGCATTTGTTGCTGGGAAATCGTTGGCCGTATGA
AA sequence Show only first row Show all	>Lus10040326 pacid=23173926 polypeptide=Lus10040326 locus=Lus10040326.g ID=Lus10040326.BGIv1.0 annot-version=v1.0 MGSQLWIVMFIISAALALNSGTVESSYEADKIVKLPGQPDVSFQQYAGPGCSSVGAGAFSEHGPFKPNANGGLINNDYSWNNEANMLYLESPAGVGFSYS GNTSFYKLVNDTITANDNFVFLQQWLLKFPEYKTRDIFITGESYAGHYVPQLAQLIVESGENLSLKGIAIGNPLLEFNTDLNGQGEYYWSHGLISDHTYD LVNTICNMSQLQREGIADNLSKPCSIVQARFDEEIPHQRSFNGYDVTSDVCISADGASKLQSLVASLRPFSTLKSKQGLLGKLDAAGEEHIDLCIQSKTD KYLNRKDVQQALHANLVGVTTWSFCSDVVNYDYNNLEIPTIGVVGSLVSSGIQVLIYSGDQDSVLPFIGTRTLVNNLAQQMMLNTTVPYKPWFDTDKQVG GWTQVYGDEKKQLGFATIRDASHLAPFSSPKRSLALFSAFVAGKSLAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040326 [exp]	0	1
AT1G49490			Leucine-rich repeat (LRR) fami...		Lus10027935 [exp]	1.0	0.9926
AT5G15430			Plant calmodulin-binding prote...		Lus10000209 [exp]	2.8	0.9786
					Lus10015828 [exp]	4.2	0.9838
AT5G53840			F-box/RNI-like/FBD-like domain...		Lus10042550 [exp]	4.2	0.9468
AT5G15430			Plant calmodulin-binding prote...		Lus10003472 [exp]	4.9	0.9826
AT1G31710			Copper amine oxidase family pr...		Lus10010540 [exp]	5.3	0.9758
AT3G08030			Protein of unknown function, D...		Lus10019727 [exp]	5.7	0.9360
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10002775 [exp]	6.3	0.9628
AT4G38830		CRK26	cysteine-rich RLK (RECEPTOR-li...		Lus10002371 [exp]	6.9	0.9203
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10020741 [exp]	7.1	0.9501

Compare expression of checked genes

Lus10040326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.