Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33530 350 / 5e-116 SCPL46 serine carboxypeptidase-like 46 (.1) AT1G28110 348 / 1e-115 SCPL45 serine carboxypeptidase-like 45 (.1.2) AT1G43780 282 / 1e-89 SCPL44 serine carboxypeptidase-like 44 (.1) AT5G42230 253 / 1e-78 SCPL41 serine carboxypeptidase-like 41 (.1) AT5G42240 252 / 4e-78 SCPL42 serine carboxypeptidase-like 42 (.1) AT1G61130 233 / 4e-71 SCPL32 serine carboxypeptidase-like 32 (.1) AT4G15100 232 / 2e-70 SCPL30 serine carboxypeptidase-like 30 (.1) AT2G12480 231 / 2e-70 SCPL43 serine carboxypeptidase-like 43 (.1.2) AT3G63470 228 / 7e-69 SCPL40 serine carboxypeptidase-like 40 (.1) AT2G24000 224 / 2e-67 SCPL22 serine carboxypeptidase-like 22 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010331 [exp] 402 / 2e-136 AT1G28110 540 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10021856 [exp] 402 / 4e-136 AT1G28110 525 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10040324 [exp] 400 / 1e-135 AT2G33530 532 / 0.0 serine carboxypeptidase-like 46 (.1) Lus10013395 [exp] 396 / 7e-134 AT1G28110 534 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10030317 [exp] 383 / 1e-128 AT1G28110 501 / 2e-175 serine carboxypeptidase-like 45 (.1.2) Lus10003302 [exp] 383 / 1e-128 AT1G28110 498 / 2e-174 serine carboxypeptidase-like 45 (.1.2) Lus10023446 [exp] 382 / 3e-128 AT1G28110 520 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10016722 [exp] 359 / 1e-119 AT1G28110 688 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10036016 [exp] 360 / 2e-119 AT1G28110 690 / 0.0 serine carboxypeptidase-like 45 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G034400 [exp] 390 / 7e-132 AT1G28110 566 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036400 [exp] 390 / 1e-131 AT2G33530 547 / 0.0 serine carboxypeptidase-like 46 (.1) Potri.016G034600 [exp] 388 / 6e-131 AT1G28110 563 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036000 [exp] 384 / 3e-129 AT1G28110 548 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036500 [exp] 357 / 5e-119 AT1G28110 619 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.003G164000 [exp] 352 / 7e-117 AT1G28110 758 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.012G105500 [exp] 351 / 1e-116 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.001G065900 [exp] 350 / 2e-116 AT1G28110 766 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.015G104700 [exp] 332 / 2e-109 AT1G28110 715 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.002G071800 [exp] 249 / 5e-77 AT5G42240 742 / 0.0 serine carboxypeptidase-like 42 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10040327 pacid=23174117 polypeptide=Lus10040327 locus=Lus10040327.g ID=Lus10040327.BGIv1.0 annot-version=v1.0 ATGGAAAGCCAACCAAATGCCTCCACCACTTTATTAACCAACACAGAACCCATCTTTCAGAAATTCAGGATCTCTGTAGCAAAGGTTGAAACTTTAACAA TGAAGTCTCCTCAGCCATTGCTCATCAAACTCATAATCATGGCATCCAGTCTTCTGATGGCCTCAAAGGAAGCTGACCGGATTGCGAGACTGCCTGGGCA GCCAGCTGGAGAGGCCGGATTCGGGCAGTTTGCAGGGTACATAACAGTTGACGACGTGCTTCAAACTAGGCTGTTTTATTACTTTGCTGAAGCTCAGACC CATCCAGCTTCCAAACCTCTTGTTCTCTGGCTTGGTGACCAGTTGGAGTGCTCAAATCTTGGAGGGTTTTCTGGCAATGGTCCATTCAGCCCTGTGAGTG GAGATGTTTTGGCAAGGAATCGCTATGCTTTCAACAAAGAGGTGAATATAATATACTTGGACATGCCAGCTGGGACAGGGTTTTCTTATTCTGCCAACAT TACTGATCAACCCACTCTTGATGACAGCATGATAGCGAAGCAGAATCTGATATTCTTGAGGAAATGGATGGAGATTCATTCAGAGTACAAGAGCAGAGAT TTCTACATCAGTGGACTCGGATATGCTACTGGCCGTTCCATTCCATTCCTGGCAGACATCATACTTAAGCAAGATGACTTCAACCTGAAAGGAGCTATGA TGGGAATTCCACTGCTGGACTTTAACACAGACTTCGGATCAATCGGAGGCTTCCTTTGGTCTCACGGACTCATATCCGACGAAACGAACAAAATCATGGA AACTTCTTGCAATGGTGCTAGGTGGTTCAGGGAGATCTTCTCAGATTCTCCTTTCTCAAAAGGTTGCAAAGCAGTAGATGACCGTCTCGATGCTGAGATT CCTGACAGCCTCGACATACAAGACGTATCTTCTAATGATTGTCTGTCATTATTTTCTGACTCTCTGCATATGGGAGATTCAAAGCTTTTGCAGTCACTCG CAAGTCGAAAAGAAGCTGCATCAGAGGGAAATGATGTTTGTCTGAGGGTGATGATCTCCGAGTATTTGAATAGAGACGATGTACAGAGAGCGCTTCATGT TAAGAAAACTAATTGGAGCATATGTTCGATGGATCTTCATTATGAAAAGAGGCAGTGGGAGAATACTACGATCGATTTGGTTGGTTCTTTAGTGGAGAGA GGAATAAGAGTGCTGATATACAGTGTTGATGAGATGACATTTGTACCATTTCTGGGTACGAGGGTGTTGGTCAATGACTTGGCCAAGAAGGTAGGGCTCA ACACAACAGTGGCTTATCAAGGATGGTTTGACTCTGACAATCAGGTTGGTGGATGGACAAATGCCTATGGGGAAGCTCTGACATACGCGAGCATTCGAGG AGGATCTGCCAAGGTTCCCAAGAGATCGCTCTCGCTGTTGCAGTCGTTTGTAGCAAGGAAGCCATTAAGTACTGCTGGTTGA
AA sequence Show only first row Show all	>Lus10040327 pacid=23174117 polypeptide=Lus10040327 locus=Lus10040327.g ID=Lus10040327.BGIv1.0 annot-version=v1.0 MESQPNASTTLLTNTEPIFQKFRISVAKVETLTMKSPQPLLIKLIIMASSLLMASKEADRIARLPGQPAGEAGFGQFAGYITVDDVLQTRLFYYFAEAQT HPASKPLVLWLGDQLECSNLGGFSGNGPFSPVSGDVLARNRYAFNKEVNIIYLDMPAGTGFSYSANITDQPTLDDSMIAKQNLIFLRKWMEIHSEYKSRD FYISGLGYATGRSIPFLADIILKQDDFNLKGAMMGIPLLDFNTDFGSIGGFLWSHGLISDETNKIMETSCNGARWFREIFSDSPFSKGCKAVDDRLDAEI PDSLDIQDVSSNDCLSLFSDSLHMGDSKLLQSLASRKEAASEGNDVCLRVMISEYLNRDDVQRALHVKKTNWSICSMDLHYEKRQWENTTIDLVGSLVER GIRVLIYSVDEMTFVPFLGTRVLVNDLAKKVGLNTTVAYQGWFDSDNQVGGWTNAYGEALTYASIRGGSAKVPKRSLSLLQSFVARKPLSTAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040327 [exp]	0	1
AT1G74920		ALDH10A8	aldehyde dehydrogenase 10A8 (....		Lus10004239 [exp]	4.7	0.9269
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10027796 [exp]	4.9	0.8677
					Lus10015702 [exp]	5.7	0.9113
AT3G12660		FLA14	FASCICLIN-like arabinogalactan...		Lus10026107 [exp]	6.5	0.8854
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10020741 [exp]	6.5	0.9132
					Lus10040066 [exp]	8.1	0.9100
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10032292 [exp]	9.5	0.8363
AT5G27870			Plant invertase/pectin methyle...		Lus10037489 [exp]	9.8	0.9109
AT4G18380			F-box family protein (.1.2)		Lus10013431 [exp]	10.4	0.8773
AT4G22390			F-box associated ubiquitinatio...		Lus10030826 [exp]	13.3	0.7978

Compare expression of checked genes

Lus10040327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.