Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39420 467 / 3e-167 alpha/beta-Hydrolases superfamily protein (.1) AT2G39410 438 / 1e-155 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G39400 432 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1) AT3G55180 427 / 1e-151 alpha/beta-Hydrolases superfamily protein (.1) AT3G55190 382 / 2e-133 alpha/beta-Hydrolases superfamily protein (.1) AT3G62860 350 / 2e-120 alpha/beta-Hydrolases superfamily protein (.1) AT2G47630 348 / 6e-120 alpha/beta-Hydrolases superfamily protein (.1) AT5G16120 278 / 3e-92 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G11090 269 / 4e-89 alpha/beta-Hydrolases superfamily protein (.1) AT1G77420 246 / 3e-79 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023448 [exp] 642 / 0 AT2G39420 459 / 2e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10007877 [exp] 353 / 3e-121 AT3G62860 501 / 2e-179 alpha/beta-Hydrolases superfamily protein (.1) Lus10011212 [exp] 280 / 3e-93 AT1G11090 430 / 2e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10030366 [exp] 278 / 9e-93 AT3G62860 400 / 2e-140 alpha/beta-Hydrolases superfamily protein (.1) Lus10017601 [exp] 266 / 2e-87 AT5G16120 514 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017600 [exp] 263 / 9e-87 AT5G16120 409 / 5e-144 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10009169 [exp] 263 / 2e-86 AT5G16120 490 / 2e-175 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10033561 [exp] 260 / 1e-84 AT5G16120 441 / 6e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10018466 [exp] 255 / 1e-84 AT1G11090 382 / 1e-134 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G049000 [exp] 469 / 3e-168 AT2G39420 479 / 8e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G212200 [exp] 469 / 7e-168 AT2G39420 462 / 4e-165 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G129000 [exp] 350 / 8e-121 AT3G62860 499 / 5e-179 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G204200 [exp] 347 / 1e-119 AT2G47630 493 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G114800 [exp] 297 / 4e-99 AT5G16120 520 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.011G046500 [exp] 266 / 7e-88 AT1G11090 461 / 1e-164 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G124000 [exp] 253 / 6e-82 AT1G77420 510 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G222300 [exp] 208 / 5e-65 AT5G19290 472 / 8e-169 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G040000 [exp] 204 / 1e-63 AT5G19290 507 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G466700 [exp] 201 / 1e-62 AT5G14980 346 / 6e-119 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF12146 [flax] [poplar] Hydrolase_4 Serine aminopeptidase, S33
Representative CDS sequence Show only first row Show all	>Lus10040328 pacid=23173806 polypeptide=Lus10040328 locus=Lus10040328.g ID=Lus10040328.BGIv1.0 annot-version=v1.0 ATGGCGAGAATTACTGAAGGTGTTAAATATACCGAGGAATTCATCCTGAATCCGAGAGGGATGAAGCTGTTCACGTGCAAGTGGTTGCCGGTGACCCAAG AGCCGAAAGCTCTCATCTTTTTATGTCATGGATACGCCATGGAGTCCAGCATCACCATGGACAGCACGGCGATGAGGCTGGCGAAACAAGGGTTTGGAGT ATACGCGATGGATTATGAAGGGCATGGGAAATCGGCTGGATTACAGGGCTACATTGACAACTTTGATTTCGTGGTCGATGATTGCTCCAGACATTTCGTC AGCATCTGCGAGGAGAAAGAAAACAGAGGAAAGAGGAGATATCTGATGGGGGAGTCCATGGGTGGAGCAGTCACGTTGCTGCTTCACAGGAAGCTCCCAA ATTTCTGGGACGGTGCCGTTTTGGTTGCTCCGATGTGTAAGATCGCCGACGACGTGAAGCCACCGCAGCTAGTGATAAGCGCCCTAACAAAGCTAAGCTA CATCATCCCGACATGGAGGATCGTCCCGACCAAGGACATAATCGACACCGCGTTCAAAGTCCCCGAAATAAGGAAACAAATCAGGGAGAATCCTCTGTGC TACAAGGGCCGTCCGCGCTTGAAGACCGCGTTCGAGCTCCTGAGGACCAGCATTGACATCGAGAAGCGGCTCTCCGAGGTGACGATGCCGTTCCTCCTCC TCCATGGCGAGGACGACAGAGTGACCGAGAAGTCGATCAGCAAGCAGCTGTACGACGTGGCGTCGAGCAAGGACAAGACGATGAAGTTGTACGACGGAAT GTGGCACGGCTTGCTGTACGGAGAAGTGCCGGAGAATATTGAAGTGGTGTTTAAGGATATTACTGAGTGGCTTGACGAGAGGAGTAGGGACTGTTCGAGT CGGGAGCTTGAAATGGAGCACAAGCTTGAGAATGATTACAAGTTGTGA
AA sequence Show only first row Show all	>Lus10040328 pacid=23173806 polypeptide=Lus10040328 locus=Lus10040328.g ID=Lus10040328.BGIv1.0 annot-version=v1.0 MARITEGVKYTEEFILNPRGMKLFTCKWLPVTQEPKALIFLCHGYAMESSITMDSTAMRLAKQGFGVYAMDYEGHGKSAGLQGYIDNFDFVVDDCSRHFV SICEEKENRGKRRYLMGESMGGAVTLLLHRKLPNFWDGAVLVAPMCKIADDVKPPQLVISALTKLSYIIPTWRIVPTKDIIDTAFKVPEIRKQIRENPLC YKGRPRLKTAFELLRTSIDIEKRLSEVTMPFLLLHGEDDRVTEKSISKQLYDVASSKDKTMKLYDGMWHGLLYGEVPENIEVVFKDITEWLDERSRDCSS RELEMEHKLENDYKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39420			alpha/beta-Hydrolases superfam...		Lus10040328 [exp]	0	1
AT5G18840			Major facilitator superfamily ...		Lus10033995 [exp]	2.4	0.9529
AT3G49200			O-acyltransferase (WSD1-like) ...		Lus10009718 [exp]	5.5	0.9348
AT3G47570			Leucine-rich repeat protein ki...		Lus10033329 [exp]	7.7	0.9391
AT2G43590			Chitinase family protein (.1)		Lus10035624 [exp]	8.5	0.9235
AT5G18840			Major facilitator superfamily ...		Lus10012780 [exp]	12.2	0.9051
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10011658 [exp]	13.0	0.9329
AT5G36930			Disease resistance protein (TI...		Lus10007821 [exp]	13.0	0.9423
AT1G28330		DYL1, DRM1	DORMANCY-ASSOCIATED PROTEIN 1,...		Lus10015418 [exp]	13.3	0.9217
AT2G24260	bHLH	LRL1, bHLH066	LJRHL1-like 1 (.1)		Lus10036286 [exp]	17.4	0.9251
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10035301 [exp]	17.7	0.9259

Compare expression of checked genes

Lus10040328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.