Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55150 484 / 2e-164 ATEXO70H1 exocyst subunit exo70 family protein H1 (.1) AT2G39380 462 / 1e-155 ATEXO70H2 exocyst subunit exo70 family protein H2 (.1) AT5G59730 407 / 2e-134 ATEXO70H7 exocyst subunit exo70 family protein H7 (.1.2) AT3G09520 400 / 6e-132 ATEXO70H4 exocyst subunit exo70 family protein H4 (.1) AT3G09530 360 / 5e-116 ATEXO70H3 exocyst subunit exo70 family protein H3 (.1) AT2G28640 346 / 3e-111 ATEXO70H5 exocyst subunit exo70 family protein H5 (.1) AT1G07725 345 / 1e-110 ATEXO70H6 exocyst subunit exo70 family protein H6 (.1) AT2G28650 291 / 3e-90 ATEXO70H8 exocyst subunit exo70 family protein H8 (.1) AT5G50380 239 / 9e-70 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT1G72470 228 / 3e-66 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023450 [exp] 983 / 0 AT3G55150 445 / 8e-150 exocyst subunit exo70 family protein H1 (.1) Lus10023452 [exp] 550 / 0 AT3G55150 458 / 2e-154 exocyst subunit exo70 family protein H1 (.1) Lus10040331 [exp] 528 / 0 AT3G55150 449 / 2e-150 exocyst subunit exo70 family protein H1 (.1) Lus10005436 [exp] 486 / 5e-165 AT5G59730 535 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10015221 [exp] 481 / 5e-163 AT2G39380 533 / 0.0 exocyst subunit exo70 family protein H2 (.1) Lus10040872 [exp] 477 / 1e-161 AT5G59730 533 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10004917 [exp] 468 / 3e-158 AT5G59730 532 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10024438 [exp] 434 / 8e-145 AT3G09520 634 / 0.0 exocyst subunit exo70 family protein H4 (.1) Lus10025291 [exp] 429 / 1e-142 AT3G09520 636 / 0.0 exocyst subunit exo70 family protein H4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G212400 [exp] 587 / 0 AT2G39380 644 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.008G048700 [exp] 555 / 0 AT2G39380 632 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.001G234600 [exp] 516 / 6e-177 AT2G39380 540 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.009G026900 [exp] 504 / 4e-172 AT5G59730 551 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Potri.006G214300 [exp] 453 / 2e-152 AT3G09520 622 / 0.0 exocyst subunit exo70 family protein H4 (.1) Potri.012G097100 [exp] 263 / 5e-79 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.015G094800 [exp] 257 / 1e-76 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.001G166400 [exp] 243 / 1e-71 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.003G068700 [exp] 243 / 1e-71 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.017G093966 [exp] 235 / 1e-68 AT3G29400 597 / 0.0 exocyst subunit exo70 family protein E1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10040329 pacid=23173919 polypeptide=Lus10040329 locus=Lus10040329.g ID=Lus10040329.BGIv1.0 annot-version=v1.0 ATGACCCTGACAAGAAAAGGGATGATGATTCCTCATCTCTTCCAATCATCAAAGAAAACCCTTTTATCTCCTCTCAATTCCTTCTCATCCTATCCGTCTT CACTCCCTCCGAATTCCCCTCTCCACTCCCCCGCCTTCTCTGCTTCCACGCTCGAGGAAGACATCGCAAATTCCGAATCAGTCATCTCAAAATGGGATCT CAAATCATCCTCCACCTCATTTGACAGAAAGGAGCTCCTGAAATCTGTCAAGGATCTTCGTAGGGCCATGCATTTCCTCGCATCAGGAAAACATCCTGAT AATCCTGCAGGAAAGCTTCAGCTTTGCCAGAAACTGATGCAGATTGCCATGACTAGGCTGGAGAGAGAGTTCTACCACATCCTGACAGGAATCCGGGATC ACCATCATCAGCTCGATCCCGAATCTGTTTCTGTTCATTCCTATTCTGAAGATGGAATTTCTGAGGAAGGGCTTTCTTCTATGTCGGATCTGAAATCGAT AGCTGACTGTATGATAAGCTCAGGTTACACTAAAGAGTGTCTCAAGATTTACCTGCTCATCAGGAAATCCATCATGGACGAAAACCTGTACCTGCTCGGA GTCGAGCATCACTACAAGTCTTCGCCAGTCCAGAGGCTGCATCCGGAAGCCCTCGAGACCACGATCAAAATCTGGATGAATGCTGTGAATTCCGGTGTGA AAAGACTGTTTCTTGGAGAGAAATTCCTCTGTGATTATGTGTTCTCAGCTTATGATAGAACCAGAGAGCTCTGTTTCTCAGAGTTGGTTAAAGAAGGAGC AGAAAACCTGTTCAGGTTTCCTGAACTGGTAGTTAAGAACAAGCAGTTAAAGGACAGAAGAAGAATATTCCCATTAATGGATCTCTATGAAGCACTCTCT AACCTATGGCCAGAGATAGAATCCATGTTCAGATGCGAGTCGACTCGAGCAGTTAAACAGCAAGCTCATTCTTCATTAATCAAGGTAGGGGACTCGGTTC GCAGGACATTGTCCGAGTTCGAATCAGCAATCCAAAAGGATCACTCCTCGAGAAACTCGGTCTCTAGTGGAGGAATCCATCCACTGACAAGATCTGTCAT GGAATATTTATCCTCACTTGGAGACTACAGTGGCATACTCTCAGAGATTCTAGCAGATTTTCTTCCTGAGAGGATTTCAAAGCTACCTGAATCATACTAC GAGAGTCCAACAACATCGGTTGGTGGGCCCTCGGAGGCGGTATCAGTCAAGCTAGTCTGGCTGATACTTAACTTGCTGTGCAAGCTAGACAGGATAGCAG AAAGACAGTACAAATCAGATGTGTCGCTTTCGTACCTTTTCCTGGCTAACAATTTGCAGTTCATCATCGAGAAAGTATGCACAACCCGGTTAAGGGTCGT GCTAGGCGAGGATTGGGTGTACAAACATGTCAACAAGGCTAAACAATATGCCGGAAGCTACGAGACAATGGCATGGAACAAAGTGTTCTTAGCCATAATA CCAACTGTAAATATTAATCCATTTCCAGAACTATCAGGTGAAGAAGTGGAGCAGTGTTTCGTTCGGTTCAATGCAGCTTTCGAGGAATCGCACAGGAAGC AGGTGTCGTGGACCGTGCCAAATCGGAAGTTTAGAGACGAATTGAAGGTCTCGATTGCGAGGAAGCTTGTGCCCGCTTACAGAGAGTTTTATGATGCATA TGTGGGGATGGTGGTGGGGTTGGAAGGTGTTGTGAAGTTTGGCCCTGATGATCTGGAGAATTACTTGTCTGATCTGTTTCATGGTGCTTCTGATTCTGGA AGTTGCTCAGAGTCTTCAGAGTCTTCTGGAGGAAAAAGTGTGAATGAATTATTATTAGTTAATAGAATATAA
AA sequence Show only first row Show all	>Lus10040329 pacid=23173919 polypeptide=Lus10040329 locus=Lus10040329.g ID=Lus10040329.BGIv1.0 annot-version=v1.0 MTLTRKGMMIPHLFQSSKKTLLSPLNSFSSYPSSLPPNSPLHSPAFSASTLEEDIANSESVISKWDLKSSSTSFDRKELLKSVKDLRRAMHFLASGKHPD NPAGKLQLCQKLMQIAMTRLEREFYHILTGIRDHHHQLDPESVSVHSYSEDGISEEGLSSMSDLKSIADCMISSGYTKECLKIYLLIRKSIMDENLYLLG VEHHYKSSPVQRLHPEALETTIKIWMNAVNSGVKRLFLGEKFLCDYVFSAYDRTRELCFSELVKEGAENLFRFPELVVKNKQLKDRRRIFPLMDLYEALS NLWPEIESMFRCESTRAVKQQAHSSLIKVGDSVRRTLSEFESAIQKDHSSRNSVSSGGIHPLTRSVMEYLSSLGDYSGILSEILADFLPERISKLPESYY ESPTTSVGGPSEAVSVKLVWLILNLLCKLDRIAERQYKSDVSLSYLFLANNLQFIIEKVCTTRLRVVLGEDWVYKHVNKAKQYAGSYETMAWNKVFLAII PTVNINPFPELSGEEVEQCFVRFNAAFEESHRKQVSWTVPNRKFRDELKVSIARKLVPAYREFYDAYVGMVVGLEGVVKFGPDDLENYLSDLFHGASDSG SCSESSESSGGKSVNELLLVNRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55150		ATEXO70H1	exocyst subunit exo70 family p...		Lus10040329 [exp]	0	1
AT3G55150		ATEXO70H1	exocyst subunit exo70 family p...		Lus10023450 [exp]	1.7	0.7325
AT4G16360			5'-AMP-activated protein kinas...		Lus10038783 [exp]	24.1	0.7109
AT2G28780			unknown protein		Lus10005903 [exp]	37.1	0.6405
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Lus10012134 [exp]	156.4	0.5260
					Lus10033709 [exp]	166.8	0.5145

Compare expression of checked genes

Lus10040329 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.