Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55150 446 / 3e-149 ATEXO70H1 exocyst subunit exo70 family protein H1 (.1) AT2G39380 420 / 4e-139 ATEXO70H2 exocyst subunit exo70 family protein H2 (.1) AT3G09520 394 / 4e-129 ATEXO70H4 exocyst subunit exo70 family protein H4 (.1) AT5G59730 354 / 1e-113 ATEXO70H7 exocyst subunit exo70 family protein H7 (.1.2) AT3G09530 350 / 5e-112 ATEXO70H3 exocyst subunit exo70 family protein H3 (.1) AT2G28640 303 / 2e-94 ATEXO70H5 exocyst subunit exo70 family protein H5 (.1) AT1G07725 301 / 9e-94 ATEXO70H6 exocyst subunit exo70 family protein H6 (.1) AT2G28650 268 / 1e-81 ATEXO70H8 exocyst subunit exo70 family protein H8 (.1) AT1G72470 234 / 4e-68 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT3G14090 228 / 3e-66 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023452 [exp] 1035 / 0 AT3G55150 458 / 2e-154 exocyst subunit exo70 family protein H1 (.1) Lus10040329 [exp] 530 / 0 AT3G55150 488 / 1e-165 exocyst subunit exo70 family protein H1 (.1) Lus10023450 [exp] 468 / 2e-158 AT3G55150 445 / 8e-150 exocyst subunit exo70 family protein H1 (.1) Lus10023455 [exp] 444 / 7e-154 AT3G55150 222 / 3e-68 exocyst subunit exo70 family protein H1 (.1) Lus10005436 [exp] 416 / 2e-137 AT5G59730 535 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10024438 [exp] 406 / 2e-133 AT3G09520 634 / 0.0 exocyst subunit exo70 family protein H4 (.1) Lus10040872 [exp] 400 / 1e-131 AT5G59730 533 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10025291 [exp] 399 / 7e-131 AT3G09520 636 / 0.0 exocyst subunit exo70 family protein H4 (.1) Lus10015221 [exp] 399 / 1e-130 AT2G39380 533 / 0.0 exocyst subunit exo70 family protein H2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G212400 [exp] 488 / 9e-166 AT2G39380 644 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.008G048700 [exp] 464 / 1e-156 AT2G39380 632 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.006G214300 [exp] 434 / 1e-144 AT3G09520 622 / 0.0 exocyst subunit exo70 family protein H4 (.1) Potri.001G234600 [exp] 416 / 9e-138 AT2G39380 540 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.009G026900 [exp] 404 / 6e-133 AT5G59730 551 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Potri.001G166400 [exp] 246 / 1e-72 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.003G068700 [exp] 239 / 2e-70 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.015G094800 [exp] 229 / 2e-66 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.012G097100 [exp] 228 / 6e-66 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.016G071000 [exp] 222 / 1e-63 AT5G52340 1021 / 0.0 exocyst subunit exo70 family protein A2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10040331 pacid=23174119 polypeptide=Lus10040331 locus=Lus10040331.g ID=Lus10040331.BGIv1.0 annot-version=v1.0 ATGGCTCAGCTAAGAAACACAATGCCAAAGAATTGCTTCTCAATCCCTTCACCAAAGAGAGCTTTCTCCTCTGCCTCATCAGCTTCTTCTTCACCTCTCC CTGCAGCAATCCCCCCTTTCAACTACACCTTCTCACCTTCATCCTCCACCATGGACAAACACATCCAAGCTGCTGAATCCACCATCTCCAAGTGGGATCT CAACTCCTCTTCATTAATCACCCACTTCACTCCACTCTTCCACCACAGCAAAAAGGACACCAAGGACTTCCTCAAGTCCATCTTCACCCTTCGCCGCGCC ATGCGCACCCTCAAGCAGTCTGAGGATTCTGTCTCTTCGGCCAAGCTTGTCCTTTGCCACAAGCTCACGCAGGCTGCCATGAGAAGGCTTGAGAAAGAGT TCCACCTCATTCTGTCCGAAACCCGAAGTCTTGACCTTCCCAAGGCTTCCATGTCGGATTTGAAGGCGATTGCTGATTGTATGACGAGTTCTGGCTATGC CAAGGAGTGTCTCGGGGTCTACATCCACGCTCGAAATTCCGTCGTAAATGATGGACTGAGCCGTGGCCTGGTAGTTGACCAGAGCCTTGATCCGGAATCT CTCGAGATTCTGATCAAGAACTGGCTGAAGGATGTCCGAGTCGCTGTCAGAACGATCTTCAATGTCGAGAAGACACTCTGCGACCTCGTGTTCGCGACAT CCGACGAGAGGACGAGAGAACTCTGCTTCTCTGAGGTGGTCAAGGAAGCAGCAGGGAACCTGTTCAGGTTCCCGGAATTCGTAACCAAGAACAACAAGAA GAATCTGAAGGACCGGATTGTCATTTTCCAACTGATGGATATGTACGAGGCGCTGTTCGATCTGTGGTCCGAGATCGAGTCCTTATTTGGAGACGGATCG TGCTCACACGTTAAACAACAAGCGCATTCGTCCATGCTCACCCTTGCAGAGTTGGTTCGCTCTAATTTGTCTGATTTCGAGTCGACATTTCAAAAGGAGT CCTCGAAAGACACGGTTATTCCTGGTGGTGGCATTCATCCGTTAACCATATCAGTAATGGAATTCCTGTCCAAGCTAGCAGATTACGGTGGGATTCTCTC GGACATTATTGCTGATACTTTACCTGAGTTCAATGCTAAGCTGCCTGAATCTCACTACTCAAGTCCAACTTCGGCTCGACTGGCGTGGCTGGTTTTGATA CTCTTATGCAAGCTTGACATGAAATCAGAACAGTATCAGGACGTTTCGCTTTCGTACCTGTTCCTAGCGAACAACCTGCAGTTTGTCTTCGAGAAGGTCT GCACGACCCGGTTAAGAGTGATCCTGGGCGAGGATTGGGTGTTCAAGCATGCACAGAAGCTCAAAAAGTACGCTGTCAGCTATGAGAAGATCGCGTGGAA CAAAGTCTTCTCTGCCTTGCCTAGCAAGCCATTCCCCGCGGAGATGTCGCCTGAAGCTGCAAGAGATCATTTCTTCAGGTTTAACGCGGCTTTCGAGAAG GCGTACAGGAAACAGGCGAAATTCGTGGTGCCGAATGGGAACTTTAGGGACGCGTTGAAGGTTTCGATAGCGAAGAAACTCGTACCGGTATATAGAGAGT TTCATGAGATGTATGGTGGAGAGGTGAGTGGGAAGAAGAAGAGTTTGGAGGTGCTGGTGAAGTATGGTCCGGATGATGTGGAGTTGTGTCTATCGGATTT GTTCCATGGTGATTCTGGATCTGATCAGCAGACTTCTCATCTACAGAATTTAGGACATGAAGAAGGAATAGTGGAAACAAGAGGGGAGGATGCCGTTGAC GTAGAAAATCTCAATGTACCAAAGGGATCGGTCGGAGGCGGTGTGGTTGGTGTATGTGATCCAGCACTTTCCAAACGGGAATTGAGCTCGGAGCCGTGGC CGATGATCTGCGTAGAGCCATGA
AA sequence Show only first row Show all	>Lus10040331 pacid=23174119 polypeptide=Lus10040331 locus=Lus10040331.g ID=Lus10040331.BGIv1.0 annot-version=v1.0 MAQLRNTMPKNCFSIPSPKRAFSSASSASSSPLPAAIPPFNYTFSPSSSTMDKHIQAAESTISKWDLNSSSLITHFTPLFHHSKKDTKDFLKSIFTLRRA MRTLKQSEDSVSSAKLVLCHKLTQAAMRRLEKEFHLILSETRSLDLPKASMSDLKAIADCMTSSGYAKECLGVYIHARNSVVNDGLSRGLVVDQSLDPES LEILIKNWLKDVRVAVRTIFNVEKTLCDLVFATSDERTRELCFSEVVKEAAGNLFRFPEFVTKNNKKNLKDRIVIFQLMDMYEALFDLWSEIESLFGDGS CSHVKQQAHSSMLTLAELVRSNLSDFESTFQKESSKDTVIPGGGIHPLTISVMEFLSKLADYGGILSDIIADTLPEFNAKLPESHYSSPTSARLAWLVLI LLCKLDMKSEQYQDVSLSYLFLANNLQFVFEKVCTTRLRVILGEDWVFKHAQKLKKYAVSYEKIAWNKVFSALPSKPFPAEMSPEAARDHFFRFNAAFEK AYRKQAKFVVPNGNFRDALKVSIAKKLVPVYREFHEMYGGEVSGKKKSLEVLVKYGPDDVELCLSDLFHGDSGSDQQTSHLQNLGHEEGIVETRGEDAVD VENLNVPKGSVGGGVVGVCDPALSKRELSSEPWPMICVEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55150		ATEXO70H1	exocyst subunit exo70 family p...		Lus10040331 [exp]	0	1
AT3G03000			EF hand calcium-binding protei...		Lus10004610 [exp]	1.4	0.8201
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Lus10004988 [exp]	6.5	0.7453
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10030286 [exp]	12.6	0.6600
AT5G58400			Peroxidase superfamily protein...		Lus10030146 [exp]	13.0	0.6126
					Lus10021617 [exp]	13.0	0.5952
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10021338 [exp]	14.1	0.6600
AT1G27220			paired amphipathic helix repea...		Lus10000805 [exp]	15.5	0.6600
					Lus10033096 [exp]	16.7	0.6600
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10010229 [exp]	17.9	0.6514
AT1G31450			Eukaryotic aspartyl protease f...		Lus10002630 [exp]	20.0	0.6419

Compare expression of checked genes

Lus10040331 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.