Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04530 583 / 0 KCS19 3-ketoacyl-CoA synthase 19 (.1) AT2G28630 497 / 5e-174 KCS12 3-ketoacyl-CoA synthase 12 (.1) AT1G07720 493 / 3e-172 KCS3 3-ketoacyl-CoA synthase 3 (.1) AT1G01120 350 / 1e-115 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT4G34510 328 / 2e-107 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT1G68530 327 / 6e-107 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT2G16280 327 / 9e-107 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT2G46720 325 / 1e-106 KCS13, HIC HIGH CARBON DIOXIDE, 3-ketoacyl-CoA synthase 13 (.1) AT1G04220 321 / 2e-104 KCS2 3-ketoacyl-CoA synthase 2 (.1) AT1G19440 321 / 2e-104 KCS4 3-ketoacyl-CoA synthase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023458 [exp] 879 / 0 AT5G04530 605 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10015222 [exp] 493 / 7e-172 AT2G28630 654 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10005434 [exp] 480 / 4e-167 AT2G28630 664 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10002191 [exp] 458 / 1e-158 AT5G04530 495 / 1e-173 3-ketoacyl-CoA synthase 19 (.1) Lus10039906 [exp] 461 / 3e-158 AT5G04530 497 / 1e-172 3-ketoacyl-CoA synthase 19 (.1) Lus10033626 [exp] 427 / 4e-146 AT5G04530 467 / 4e-162 3-ketoacyl-CoA synthase 19 (.1) Lus10033625 [exp] 426 / 5e-142 AT5G04530 461 / 9e-156 3-ketoacyl-CoA synthase 19 (.1) Lus10004918 [exp] 399 / 3e-136 AT2G28630 560 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10040873 [exp] 374 / 1e-126 AT2G28630 546 / 0.0 3-ketoacyl-CoA synthase 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G212600 [exp] 609 / 0 AT5G04530 576 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G119600 [exp] 592 / 0 AT5G04530 561 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G119800 [exp] 550 / 0 AT5G04530 558 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G120100 [exp] 528 / 0 AT5G04530 543 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.009G026800 [exp] 515 / 0 AT2G28630 660 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.001G234500 [exp] 509 / 9e-179 AT2G28630 647 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.019G091600 [exp] 497 / 8e-175 AT5G04530 520 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.008G048500 [exp] 363 / 2e-123 AT5G04530 337 / 2e-113 3-ketoacyl-CoA synthase 19 (.1) Potri.014G104300 [exp] 342 / 3e-112 AT1G01120 775 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Potri.002G178000 [exp] 335 / 1e-109 AT1G01120 826 / 0.0 3-ketoacyl-CoA synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF08392 [flax] [poplar] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [flax] [poplar] Thiolase PF08541 [flax] [poplar] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Lus10040333 pacid=23173965 polypeptide=Lus10040333 locus=Lus10040333.g ID=Lus10040333.BGIv1.0 annot-version=v1.0 ATGGTGATCTTTCTCTTCCTTCTGTTCTCCTTCTTCACTTACCATCTCTACAAGCTTCTCTTCCAGAACAGATCAGGTTCATGCTGCTACATGCTCCACT ACGAATGCTACAAGGCAACCGAAGACCGGAAGCTTGACACCAAAAGATGTGCTCAGATTGTGATGAGAAACAAGAACCTTGGGCTGCAAGAATACAGGTT CCTTCTCCAGACCATTGTCAACTCTGGCCTGGGGGAAGAAACTTACAGCCCAAGAAACGTCCTGGAAGGCAAAGAACAAGCCCCCACGATGGTCGATGCC TTCTTGGAGGTCGATGACATCATGTTCGACACCTTGGACGCTCTCTTCGCCAAGACTAGAGTTTCCCCATCGGAGATTGACATTCTTGTCGTGAATCTCT CTCTGTTCTCCCCCGAACCTTCCTTGACATCTAGGGTTGTGAACAAGTACAAGATGAGGGAAGACATCAAGACATTCAACATTTCGGGGATGGGGTGCAG CGCGAGCCTCGTGGCGATCGATCTGGTCCAGCAGCTGTTCAAGACGCACAAGAGGGTGATGGCGGTTGTTGTGAGCACGGAGTCCATTGCACCGAATTGG TACTGCGGGACAGAAAGGTCGATGATCTTGTCGAACTGCCTCTTCAGGTCAGGTGGGTGCTCAATGCTTTTGACAAACAACGGAGCCCTGAGGGGTAAAT CGGTTATGAAGCTAAACCATTTGGTCCGAACCCATCTCGGATCGGACGACGAAGCATACAGCTGCTGCATCCAAAAGGAAGATGGGTTCGGACACAAAGG TTTCCTCCTCACCAAAGGACTCACAAAAGCTGCTGCTCAAGCTTTCAAACTAAACCTCAGAATTCTCGTACCAAAGATTCTACCTTTGAAAGATCTCCTC CTCTACATTATCCTCTCTTTCACCAGAAAGAAATCGAAAACCGCTACCCTTTCGCTCGAAACAGCAGCCGGCTCAGGACTCAACCTGAAGGCCGGAATCG AGCACTTCTGCATCCACCCCGGTGGCAGAGCAGTGATCGATGGCGTGGGGAAAAGCTTGGGGCTCGATGACTACGACCTCGAGCCTTCGCGAATGGCCCT CCACCGATTCGGGAACACATCGGCTGGCGGGCTGTGGTATGTGTTGGGGTACATGGAGGCCAAGAAGAGGCTGAAGAAAGGTGACAGGATTTTCATGGTC GGGTTCGGGGCCGGATTCAAGTGTAACAACTGTGTGTGGGAAGTGACTAAGGATATGGGAAATGGGAATGTTTGGGAAGGTTGTATTGATGAATATCCTC CTCCTCCTGGAACTGTTAATCCTTTCCTGGAGAAGTTCAGCTTCATCAACGACGAGAATGTTCGATTCGAGGATGTGATTTCTGCTTTTAGCGAGATTTC GAGGTCCGGAGAAGAAGAGGAAGAAGGGAGTAAGTAG
AA sequence Show only first row Show all	>Lus10040333 pacid=23173965 polypeptide=Lus10040333 locus=Lus10040333.g ID=Lus10040333.BGIv1.0 annot-version=v1.0 MVIFLFLLFSFFTYHLYKLLFQNRSGSCCYMLHYECYKATEDRKLDTKRCAQIVMRNKNLGLQEYRFLLQTIVNSGLGEETYSPRNVLEGKEQAPTMVDA FLEVDDIMFDTLDALFAKTRVSPSEIDILVVNLSLFSPEPSLTSRVVNKYKMREDIKTFNISGMGCSASLVAIDLVQQLFKTHKRVMAVVVSTESIAPNW YCGTERSMILSNCLFRSGGCSMLLTNNGALRGKSVMKLNHLVRTHLGSDDEAYSCCIQKEDGFGHKGFLLTKGLTKAAAQAFKLNLRILVPKILPLKDLL LYIILSFTRKKSKTATLSLETAAGSGLNLKAGIEHFCIHPGGRAVIDGVGKSLGLDDYDLEPSRMALHRFGNTSAGGLWYVLGYMEAKKRLKKGDRIFMV GFGAGFKCNNCVWEVTKDMGNGNVWEGCIDEYPPPPGTVNPFLEKFSFINDENVRFEDVISAFSEISRSGEEEEEGSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10040333 [exp]	0	1
AT3G26660	AS2	LBD24	LOB domain-containing protein ...		Lus10009567 [exp]	1.0	0.9697
AT3G63480			ATP binding microtubule motor ...		Lus10035343 [exp]	3.9	0.9610
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10040150 [exp]	4.2	0.9605
AT4G39790			Protein of unknown function (D...		Lus10041710 [exp]	5.1	0.9517
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007352 [exp]	5.3	0.9690
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10039736 [exp]	6.6	0.9628
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10036769 [exp]	6.9	0.9520
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Lus10041924 [exp]	7.1	0.9632
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10039362 [exp]	7.1	0.9541
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10031689 [exp]	8.1	0.9536

Compare expression of checked genes

Lus10040333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.