Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18630 365 / 1e-124 Protein of unknown function (DUF677) (.1) AT4G34320 331 / 8e-112 Protein of unknown function (DUF677) (.1) AT5G66675 315 / 7e-105 Protein of unknown function (DUF677) (.1) AT4G34330 237 / 2e-75 Protein of unknown function (DUF677) (.1) AT5G66670 235 / 8e-74 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) AT5G66660 210 / 3e-64 Protein of unknown function (DUF677) (.1) AT3G28270 135 / 6e-36 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) AT3G28300 100 / 1e-23 AT14A Protein of unknown function (DUF677) (.1) AT3G28290 100 / 1e-23 AT14A Protein of unknown function (DUF677) (.1) AT3G57100 83 / 2e-17 Protein of unknown function (DUF677) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023459 [exp] 615 / 0 AT2G18630 419 / 9e-146 Protein of unknown function (DUF677) (.1) Lus10011295 [exp] 325 / 7e-109 AT4G34320 495 / 3e-176 Protein of unknown function (DUF677) (.1) Lus10040489 [exp] 296 / 9e-98 AT4G34320 458 / 9e-162 Protein of unknown function (DUF677) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G031200 [exp] 381 / 3e-131 AT2G18630 387 / 3e-133 Protein of unknown function (DUF677) (.1) Potri.T125304 [exp] 362 / 9e-124 AT4G34320 528 / 0.0 Protein of unknown function (DUF677) (.1) Potri.009G112430 [exp] 362 / 9e-124 AT4G34320 528 / 0.0 Protein of unknown function (DUF677) (.1) Potri.004G150800 [exp] 357 / 8e-122 AT4G34320 536 / 0.0 Protein of unknown function (DUF677) (.1) Potri.005G127200 [exp] 329 / 6e-111 AT2G18630 337 / 8e-114 Protein of unknown function (DUF677) (.1) Potri.005G127401 [exp] 329 / 8e-111 AT2G18630 339 / 2e-114 Protein of unknown function (DUF677) (.1) Potri.005G127300 [exp] 329 / 9e-111 AT2G18630 340 / 4e-115 Protein of unknown function (DUF677) (.1) Potri.013G113800 [exp] 46 / 3e-05 ND / Potri.019G084400 [exp] 45 / 5e-05 AT1G77855 47 / 5e-06 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF05055 [flax] [poplar] DUF677 Protein of unknown function (DUF677)
Representative CDS sequence Show only first row Show all	>Lus10040334 pacid=23174124 polypeptide=Lus10040334 locus=Lus10040334.g ID=Lus10040334.BGIv1.0 annot-version=v1.0 ATGGGAGGGAATTGCAGTACGGGCAACTCAGCTATTGAATCTCCTCCTTCACCAACCCCCAGCATGAACCCTAATCCCCAACTTGCTTCAGCATTGACCT CATACGAAGATGCTTGCAAGACCGATCCCGACCTACAGGCATTTGATGCAACCATCCACGAAAGGACGAATCGAGTCATCAATAGCCTCGCCACGACTGT GGAGGTCAGATCGCTCTCGTTCGATTCGCTCAAGGAAGTCACAACTTGTCTCCTCGACATGAATCAGGAAGTAGTCAAAGTCATACTCGACTGCAAGAAA GACGTATGGAAAGACACCGGATTGTTCGAATTGGTCGAGGAGTATTTCGACAACAGCATCAAGACGATGGATTTCTGCGCCGTTCTCGAAAACTGCGTCA AGAACGCTCGAAACAGCCAGCTCCTCGTGCAGGTCGCGGTCAAACAGTTCGAGCAAGAACAGTCGTTGGGACAGAAGAAGTTCGTCAAGACATTACACGA ACTGCGGATGTTTAAAGACGCTGGGAATCCGTTCACACCGGAGTTTTTCGATCTGTTCCAGGTGGTTTACAGACGGCAGATTTCGATGCTGGAGAAGCTA CAGCGAAGGAAGACGAAGCTCGACAAGAAGATGAAGTCGATGAAGAAATGGAGGATGGTGACGAACGTGCTGTTCGTTTCAGCGTTCGTTTCCGTCCTGG TGTTCTCTGTAGTGGCAGCTGCCGTAGCTGCACCTCCTGTTATAACAGCGCTGGCAGGTGCATTGGCTGTTCCGATTGGTTCGATTGGAAAATGGTGCAA CAATCTGTGGAACAAGTATATGCAGGCGTTGAAGGGGGAGAAGGAGCTTGTTAGCATGTTCCAGGTGGGGACTTTCATTGCCATCAAAGATATGGACAAT ATAAGGGTACTTGTGGAGAAATTGGAAGTCGGAATCGAGGCAATTGTGCAAAATGCGAGCTTTGCCATAAGGGAAGATGATGATCATGCTGTGGAGCTTG TGATTGATGAGATTAAGAAGAAGTTGGAGATGTTAACGGAGACCATTGATGCTTTGGGGGAGCACACGCATAAGTGTAGCCGCGATATTAGCCAGGCGAG GACCGTTATCTTGCAGAAGATAATCAGATACCCGGGGCCTTAA
AA sequence Show only first row Show all	>Lus10040334 pacid=23174124 polypeptide=Lus10040334 locus=Lus10040334.g ID=Lus10040334.BGIv1.0 annot-version=v1.0 MGGNCSTGNSAIESPPSPTPSMNPNPQLASALTSYEDACKTDPDLQAFDATIHERTNRVINSLATTVEVRSLSFDSLKEVTTCLLDMNQEVVKVILDCKK DVWKDTGLFELVEEYFDNSIKTMDFCAVLENCVKNARNSQLLVQVAVKQFEQEQSLGQKKFVKTLHELRMFKDAGNPFTPEFFDLFQVVYRRQISMLEKL QRRKTKLDKKMKSMKKWRMVTNVLFVSAFVSVLVFSVVAAAVAAPPVITALAGALAVPIGSIGKWCNNLWNKYMQALKGEKELVSMFQVGTFIAIKDMDN IRVLVEKLEVGIEAIVQNASFAIREDDDHAVELVIDEIKKKLEMLTETIDALGEHTHKCSRDISQARTVILQKIIRYPGP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18630			Protein of unknown function (D...		Lus10040334 [exp]	0	1
AT2G18630			Protein of unknown function (D...		Lus10023459 [exp]	1.0	0.8485
AT1G63610			unknown protein		Lus10030753 [exp]	3.5	0.7788
AT1G25550	GARP		myb-like transcription factor ...		Lus10041485 [exp]	4.2	0.7839
AT5G42130		AtMfl1	MitoFerrinLike1, Mitochondrial...		Lus10042796 [exp]	5.1	0.7743
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Lus10022848 [exp]	5.7	0.8023
AT5G42130		AtMfl1	MitoFerrinLike1, Mitochondrial...		Lus10042797 [exp]	6.6	0.7805
AT1G75800			Pathogenesis-related thaumatin...		Lus10013560 [exp]	7.1	0.7671
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10003666 [exp]	11.2	0.8030
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Lus10043300 [exp]	15.9	0.7645
AT5G28830			calcium-binding EF hand family...		Lus10009175 [exp]	16.4	0.7682

Compare expression of checked genes

Lus10040334 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.