Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12360 726 / 0 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT3G09550 644 / 0 Ankyrin repeat family protein (.1) AT2G31820 273 / 2e-83 Ankyrin repeat family protein (.1) AT1G05640 271 / 4e-83 Ankyrin repeat family protein (.1) AT1G07710 256 / 3e-78 Ankyrin repeat family protein (.1) AT5G60070 255 / 1e-77 ankyrin repeat family protein (.1) AT2G01680 249 / 2e-75 Ankyrin repeat family protein (.1) AT5G02620 242 / 5e-73 ATANK1, ANK1 ankyrin-like1 (.1) AT1G10340 91 / 3e-19 Ankyrin repeat family protein (.1.2) AT5G54710 91 / 7e-19 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023460 [exp] 822 / 0 AT3G12360 929 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10003308 [exp] 768 / 0 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10015037 [exp] 607 / 0 AT3G09550 849 / 0.0 Ankyrin repeat family protein (.1) Lus10003986 [exp] 592 / 0 AT3G09550 831 / 0.0 Ankyrin repeat family protein (.1) Lus10005432 [exp] 283 / 2e-88 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10015224 [exp] 282 / 5e-88 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10021814 [exp] 277 / 5e-86 AT2G01680 771 / 0.0 Ankyrin repeat family protein (.1) Lus10034579 [exp] 274 / 6e-85 AT2G01680 768 / 0.0 Ankyrin repeat family protein (.1) Lus10008329 [exp] 270 / 2e-82 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G048400 [exp] 756 / 0 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.010G212700 [exp] 746 / 0 AT3G12360 858 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.006G214500 [exp] 632 / 0 AT3G12360 742 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.016G080700 [exp] 291 / 2e-91 AT1G07710 570 / 0.0 Ankyrin repeat family protein (.1) Potri.006G214600 [exp] 289 / 8e-91 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1) Potri.007G099600 [exp] 289 / 1e-90 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.010G106800 [exp] 276 / 7e-86 AT2G01680 778 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069300 [exp] 274 / 4e-85 AT1G07710 695 / 0.0 Ankyrin repeat family protein (.1) Potri.008G134500 [exp] 268 / 9e-83 AT2G01680 750 / 0.0 Ankyrin repeat family protein (.1) Potri.017G006800 [exp] 269 / 3e-82 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10040335 pacid=23174197 polypeptide=Lus10040335 locus=Lus10040335.g ID=Lus10040335.BGIv1.0 annot-version=v1.0 ATGGAAAAAGGACTCCCTGAGCTCTCAACAGCTCCTGCTCTGGTTCTGTCCAATTCTGGGAAAAGGATGGATCAAGCTGGAAACAAGAAGAAGAAGTACA TCAAGCAAGTGACTGGACGCCACAACGACACTGAGCTCCACCTGGCGGCCCAGCGTGGGGATTTGGCTGCTATCAAGCAGATTCTGGATGATATTGATAC CCAAATGCTTGATGACTTGGATACCGAGGTTGCGGAGATAAGGGCTTCGGTCGTCAATGAGCTGAATGAGCTTGGAGAGACTGCCTTGTTTACTGCTGCT GACAAAGGCTATCTTGAAGTAGTGAAAGAGCTTCTGAAGTATTCGAGTAAGGAATGCACTGCTCGGAAGAACCGGTCTGGGTTTGATCCCCTCCATATTG CTTGTCTGCAAGGGCACCATGGTAAGAATAAGGGTTTTATGGCTGATTACAAGCCAATTGTTCAAGCTCTACTGGACCATGATCCTACCTTGAGCAAAAC ATACGGGCCCTCCAACGCCACACCTCTTGTATCTGCAGCCACCAGAGGGCACACTGCTGTGGTCAACGAGTTGCTGTCCAAGGATGATACTTTATTGGAG ATTGCTATGTCCAACGGTAAAAATGCGTTGCATTTAGCTGCAAGGCAGGGGCATGTTGAAATCATGAAGGCATTGCTAACCAAAGATCCGCAGTTGGCAC GAAGGACCGACAAGAAAGGGCAGACTGCATTGCACCTGGCTGTCAAAGGCCAGAGCTGTGAAGTGGTGAAATTGCTTCTTGCTGCTGATCCTGCCATTGT CATGCTGCCAGACAATTGTATATGTTCCTTTTCCTTGCAATTTGTGAATGAATTGTTATTGCTTCCTGATACGAATGTGAATGCGCTGACTAGAGATCAC AAAACAGCTCTTGATATAGCCGAAGAGCTTGCCCTTTCGGAACAATCTTCGGATATAAGGGAGTGTCTTTCTCGGCATGGAGCTGTTCGAGCCAATGAAC TCAACCAACCAAGGGATGAGTTGAGAAAGACAGTTACACAGATCAAGAACGACGTCCATACTCAGCTCGAGCAAACCAGAAGGACGAACAAGAATGTGCA CAACATCTCGAAAGAGCTGAGGAAGCTCCACCGCGAAGGGATCAACAATGCTACCAACTCCGTTACTGTGGTAGCTGTCCTGTTCGCCACCGTTGCATTC GCAGCCATTTTCACTGTTCCCGGAGGGGACGATGACAACGGACTGGCTGTTGTGGTGACGCATCTTTCTTTCAAGATCTTCTTCGTGTTCAATGCCATTG CGCTCTTCACATCGTTGGCTGTCGTGGTAGTCCAGATCACGCTGGTGAGAGGGGAGACCAAAGCGGAGAGGCGAGTTGTTGAGGTGATCAACAAGCTGAT GTGGCTGGCTTCTGTCTGCACCTCGGTGGCGTTCATGGCGTCTGCTTATATTGTGGTTGGCAGGAAGCATGAGTGGGCTGCGATTCTGGTTACGGTAGTT GGTGGAGTGATCATGGTTGGTGTTTTGGGGACCATGAGTTATTATGTTGTGAAGTCGAAGAGGAGTCGGTCCATGAGGAAGAGGGAGAAGAGGTATGCGA GCCAGAGCGGTTTGTCGAATTCGTGGCATCACTCTGATTTTTCGAATTCAGAACTTGATCGAATCTACGCACTGTGA
AA sequence Show only first row Show all	>Lus10040335 pacid=23174197 polypeptide=Lus10040335 locus=Lus10040335.g ID=Lus10040335.BGIv1.0 annot-version=v1.0 MEKGLPELSTAPALVLSNSGKRMDQAGNKKKKYIKQVTGRHNDTELHLAAQRGDLAAIKQILDDIDTQMLDDLDTEVAEIRASVVNELNELGETALFTAA DKGYLEVVKELLKYSSKECTARKNRSGFDPLHIACLQGHHGKNKGFMADYKPIVQALLDHDPTLSKTYGPSNATPLVSAATRGHTAVVNELLSKDDTLLE IAMSNGKNALHLAARQGHVEIMKALLTKDPQLARRTDKKGQTALHLAVKGQSCEVVKLLLAADPAIVMLPDNCICSFSLQFVNELLLLPDTNVNALTRDH KTALDIAEELALSEQSSDIRECLSRHGAVRANELNQPRDELRKTVTQIKNDVHTQLEQTRRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAF AAIFTVPGGDDDNGLAVVVTHLSFKIFFVFNAIALFTSLAVVVVQITLVRGETKAERRVVEVINKLMWLASVCTSVAFMASAYIVVGRKHEWAAILVTVV GGVIMVGVLGTMSYYVVKSKRSRSMRKREKRYASQSGLSNSWHHSDFSNSELDRIYAL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Lus10040335 [exp]	0	1
AT1G27180			disease resistance protein (TI...		Lus10017143 [exp]	1.4	0.9208
AT3G57550		GK-2, AGK2	GUANYLATE KINAS 2, guanylate k...		Lus10011328 [exp]	2.8	0.9090
AT4G39830			Cupredoxin superfamily protein...		Lus10016808 [exp]	4.8	0.9334
AT1G74770			zinc ion binding (.1)		Lus10042188 [exp]	14.5	0.8747
AT4G28400			Protein phosphatase 2C family ...		Lus10018618 [exp]	15.9	0.8938
AT1G04985			unknown protein		Lus10015157 [exp]	18.3	0.8692
					Lus10043270 [exp]	21.7	0.8621
AT2G21620		RD2	Adenine nucleotide alpha hydro...		Lus10042317 [exp]	21.9	0.9031
AT1G11340			S-locus lectin protein kinase ...		Lus10041679 [exp]	29.2	0.9005
AT1G30755			Protein of unknown function (D...		Lus10013554 [exp]	31.4	0.8937

Compare expression of checked genes

Lus10040335 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.